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Monarch Initiative

Login: monarch-initiative

Company: null

Location: Globally-distributed team (see https://monarchinitiative.org/page/team)

email:

Blog: https://github.com/monarch-initiative/monarch-app/blob/master/README.md#about-monarch

Members

Repositories

biolink-api-to-be-deleted: API for linked biological knowledge
BioWeave: Research Prototype for BioWeave Language and Tools
deprecated-human-disease-ontology: Deprecated, see README
dipper: Data Ingestion Pipeline for SciGraph
disease-miner: mining and merging disease resources
fa-incaform: Fanconi Anemia INCAForm site
ga4gh-server: Implementation of the ga4gh/schemas
GENO-ontology: Repository for representing genotypes and their association with phenotypes
glycomics-phenotype-annotation-data: null
glyco-phenotype-ontology: An ontology module describing molecular glyco-phenotypes
golr-schema: Utility to generate a schema.xml from a yaml config file.
hpoannotqc: HPO Annotation QC
hpo-plain-index: Generates a solr index of plain language terms in the HPO and their grouping classes
HpoTextMining: Perform text mining for identification of HPO terms in free text from scientific publication.
HPO-UMLS-Integration: Repository for HPO UMLS integration QA code and tracking issues
hpo-web-config: static files for HPO website
ingest-artifacts: store artifacts generated ingesting Monarch's sources via Dipper
kboom: Bayes OWL Ontology Merging
loinc2hpo: Java library to map LOINC-encoded test results to Human Phenotype Ontology
mckb: Monarch Cancer Knowledge Base
monarch-analysis: Scripts to analyze monarch data sets and scigraph
monarch-app: Monarch web application and API
monarch-cypher-queries: null
monarch-disease-ontology-RETIRED: THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build
monarch-disease-ontology-RETIRED: THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build
monarch-disease-ontology-RETIRED: THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build
monarch-disease-ontology-RETIRED: THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build
monarch-installer: Installer for running Monarch system locally
monarch-mme: Matchmaker Exchange for Monarch
monarch-models: This is the data repository for the models created and edited with WebPhenote, the Monarch instance of the Noctua tool stack.
monarch-ng: Example of Webpack, AngularJS, Falcor and SciGraph in a single page web application
monarch-ontology: Top level monarch importer ontology
monarch-owlsim-data: null
monarch-phenote: stub for monarch phenote
mondo: Pipeline for building mondo
mondo: Pipeline for building mondo
mondo: Pipeline for building mondo
mondo: Pipeline for building mondo
OLPG: A modern Java library for working with (biological) ontologies.
OLPG: A modern Java library for working with (biological) ontologies.
omia-ontology: Source files for axiomatizing the ontology of OMIA
ont-review: null
owlsim-hadoop: null
owlsim-v3: Ontology Based Profile Matching
owlsim-v3-config: Configuration for OwlSim3 for Monarch
phenoCompare: Phenotype Compare
phenogrid: The phenogrid widget
OLPG: A modern Java library for working with (biological) ontologies.
OLPG: A modern Java library for working with (biological) ontologies.
phenopacket-scraper-api: REST API for phenopacket-scraper
phenopacket-scraper-core: Extracts information from life-science websites and texts, generating phenopackets with the extracted information and correct external ontology references.
phenopacket-scraper-webapp: null
PhenoteFX: PhenoteFX
phenotypr: Patient self-phenotyping tools and project management
pubmed-browser: null
SciGraph-docker-monarch-data: Build two Docker images with the monarch configs. Uses master HEAD from the SciGraph github repo.
SciGraph-docker-monarch-ontology: null
SciGraph-docker-ncats: Docker image for SciGraph ncats instance
SciGraph-Sim: OwlSim on SciGraph
SEPIO-ontology: Ontology for representing scientific evidence and provenance information
sleep-apnea-clustering: R library and scripts to process sleep data for clustering
solr-docker-monarch-feature-location: Docker image to create the solr index for the feature-location core.
solr-docker-monarch-golr: Docker image to create the solr index for the golr core.
solr-docker-monarch-search: Docker image to create the solr index for the search core.

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.