Nico Matentzoglu

Login: matentzn

Company: EMBL-EBI

Location: Cambridge

Bio: Working at EMBL-EBI as Semantic Web Developer

Blog: https://www.linkedin.com/in/nmatentzoglu/

Blog: https://www.linkedin.com/in/nmatentzoglu/

Member of

1. Monarch Initiative

Repositories

bioportal.download

Tool to download the Bioportal Repository and take Snapshots (for empirical experimentation).

cc-warc-examples

CommonCrawl WARC/WET/WAT examples and processing code for Java + Hadoop

corpusdebugger

Command line tool to debug a set of ontologies at once, to ensure interoperability.

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

data-science-ontology

null

dipper-docker

Basic dockerised version of Dipper (https://github.com/monarch-initiative/dipper).

DLMinerWebUI

null

docker-neo4j-knowledgebase

Neo4j instance loaded with VFB KB

Docker-OLS-loader

Import data from OWL to NEO4J PROD DB

docker-sbt-owlery

Owlery server loaded with VFB.owl

ds_cleaning_project

null

ebi-patternanalysis-pipeline

docker container that analyses all ontologies in the shared volumes corpus directory and returns markdown and csv files.

ebi.utilities

Ontology utility classes for EBI related project. Not intended for public use.

ecco

a diff tool for OWL 2 ontologies

entailments

This is just a first stab at a new version of the OWL entailment extractor described in "Samantha Bail, Bijan Parsia, Uli Sattler. Extracting finite sets of entailments from OWL ontologies.

ev.owl

OWL Evaluation Ontology

ExData_Plotting1

Plotting Assignment 1 for Exploratory Data Analysis

hypothesis.browser

Simple App to explore hypotheses creates with the DLMiner tool

inference-aggregated

null

inference-inspector

Plugin for Protégé 5 for making consequences to modelling actions explicit.

inferencereport

Simple command line tool that outputs subsumptions and equivalences seperated by imports that caused them

metrics.development.deploy

Scripts for deploying metrics server etc

metrics.harvest.deploy

Deployment of the harvesting pipeline of the metrics server

metrics.server.deploy

Deployment files of Metrics Server

module.extractor

Simple commandline tool for OWL module extraction

neosemantics

Tools for connecting the two (RDF and LPG) connected data worlds.

OLS

Ontology Lookup Service from SPOT at EBI

ontologies

Will be deleted soon, dont use.

ontologyinferenceanalysis

Analytics tool to get a brief understanding of the logical content of a set of ontologies, comparing different reasoners

ontology-starter-kit

Bootstrap an OBO Library ontology

otno

null

owlexperimentontology

null

owl-experiments

API for OWL Experiments

owlreasonerontology

An ontology that captures aspects of Description Logic, Expressivity, OWL reasoners, specific implementations and optimisations.

owl-reasoner-verification

Framework for OWL Reasoner Verification

patternextract

Do not use, just backup.

phenotypepatternanalysis

This repository contains the ongoing work of extracting and documenting phenotype related patterns across relevant phenotype ontologies

phenotypepatternanalysis

This repository contains the ongoing work of extracting and documenting phenotype related patterns across relevant phenotype ontologies

phenotyp_ontology_survey

null

pheno-workbench-docker

null

ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

protegesurvey

Protege Plugin to conduct User Studies

RepData_PeerAssessment1

Peer Assessment 1 for Reproducible Research

r-knitr

knits all Rmd files in shared volume

sc-dl-group

null

Super-Simple-Protege-Module-Extractor

See title. Syntactic locality based Modules

upheno

null

VFB_neo4j

A repository of scripts for extending the OLS neo4J DB for use as a VFB back end server.

vfbtriplestore

Do not use. Instance for loading basic RDF4J triplestore with instance data

Commits To