Dan Keith

Login: DoctorBud

Company: Quantum Clay

Location: Eugene, Oregon

Bio: null

Blog: http://doctorbud.github.io

Blog: http://doctorbud.github.io

Member of

  1. Monarch Initiative
  2. NCATS Data Translator Project - Tangerine Team
  3. OHSU Library
  4. PhenoPackets
  5. null
  6. null

Repositories

bbop-client-barista
Manager for handling per-model client-to-client and server-to-client communication via Barista.
bio-attribute-ontology
source files for OBA (Ontology of Biological Attributes)
BioJupyter
Experiments with Jupyter and Biodata
biolink-api
Uber API for biological data
biolink-model
Schema and generated objects for biolink data model and upper ontology
browser-elm-compiler
The Elm compiler as a web worker
Client.js
A JavaScript client for Triple Pattern Fragments interfaces.
clj-wamp
WebSocket Application Messaging Protocol (WAMP) for Clojure and HTTP Kit
commento
A privacy-focused Disqus alternative
cq-notebooks
Notebooks for answering competency questions
dipper
Data Ingestion Pipeline for SciGraph
DistributedAlgorithms
DistributedAlgorithms in NodeJS
DockerNodeTreasureHuntServer
null
electrum
Electrum; Bitcoin thin client
gitter-export-room
Export a JSON archive of a Gitter room's messages
godown
Adapted GopherJS Playground to self-compile in the browser.
gopherjs.github.io
GopherJS Playground
graph-viz-d3-js
Graphviz web D3.js renderer
graphviz-viewer
A lightweight web application using viz.js to render Graphviz files.
Hack4Cause2017
Hack4Cause 2017 repo.
Jaspar_FA
exploring JASPAR dataset and model ingest for Translator FA questions
minerva
null
monarch-app
Monarch web application and API
monarch_autocomplete
autocomplete component for Monarchinitiative.org built with Vue.js version 2
monarch-devops
DevOps utilities
monarch-mme
Matchmaker Exchange for Monarch
monarch-models
This is the data repository for the models created and edited with WebPhenote, the Monarch instance of the Noctua tool stack.
monarch-ng
Example of Webpack, AngularJS, Falcor and SciGraph in a single page web application
monarch-phenote
stub for monarch phenote
noctua
Graph-based modeling environment for biology, including prototype editor and services
noctua-models
This is the data repository for the models created and edited with the Noctua tool stack for GO.
oba-inca-form
null
oba-inca-form-old
INCA Form for OBA (Ontology of Biological Attributes)
pages-test
pages-test
phenopacket-format
null
phenopacket-python
null
phenopacket-reference-implementation
Reference java implementation for phenopackets
phenopacket-scraper-api
REST API for phenopacket-scraper
phenopacket-scraper-core
Extracts information from life-science websites and texts, generating phenopackets with the extracted information and correct external ontology references.
phenopacket-scraper-webapp
null
pocket-monarch
An experiment in creating an MVP of Monarch in VueJS
ProtoPile1
Version 1 of a GitHub Pages-enabled Phenopacket pile
ProtoPile2
A GitHub-Pages enabled site for the storage and sharing of Phenopackets (work in progress)
pxftools
A command line utility for operating over Phenotype eXchange Format (PXF) files.
raspberrypi-node
null
schnack
?? Simple node app for Disqus-like drop-in commenting on static websites
shields
Concise, consistent, and legible badges in SVG and raster format
SmartDownPreview
null
smartdown_vuegridlayout
null
stackedit
In-browser Markdown editor
sweet.js
Sweeten your JavaScript.
table-editor
Lightweight CSV/TSV editor that supports autocomplete and is guided by a DOSDP-aware YAML configuration.
tableview-workbench
A Noctua Workbench to allow entry and viewing of models in a tabular format
tislab.org
Public-facing website for tislab.org
translator-knowledge-beacon
NCATS Translator Knowledge Beacon Application Programming Interface plus Sample code
ui-grid
UI Grid: an Angular Data Grid
urbaninsight
Hack for a Cause 2017 Eugene Dashboard Website
viz.js
A hack to put Graphviz on the web.
VueDemo1
null
VueDemo2
null
vue-grid-layout
A draggable and resizable grid layout, for Vue.js.
webpack-babel-starter
Webpack 2 / Babel starter kit with full development & build workflow

Commits To

RepositoryMost Recent Commit# Commits
monarch-initiative/monarch-mme2017-09-28 01:29:19.04
monarch-initiative/monarch-phenote2016-11-17 02:13:21.06
owlcollab/owltools2016-03-09 20:37:53.01
monarch-initiative/monarch-ng2016-05-31 09:59:54.013
monarch-initiative/monarch-models2016-07-29 19:55:53.04
DoctorBud/pocket-monarch2017-10-04 19:11:58.03
putmantime/monarch_autocomplete2017-11-11 01:04:47.01


This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.