Tim Putman

Login: putmantime

Company: The Scripps Research Institute

Location: La Jolla, CA

Bio: null

Blog:

Blog:

Member of

1. Monarch Initiative

Repositories

Apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin

BigGIM_APIWrapper

Wrapper API to make the the BigGIM API Translator SMARTAPI compliant

biolink-api

API for linked biological knowledge

cell_component_visualizer

Visual diagram of chlamydia infected cell that highlights the organelle or cell component based on the GO id input

chlambase

null

ChlamBase.org

null

cmdcolin.github.io

Homepage

CMOD

Web application for viewing microbial genomic data from Wikidata

CMOD.Django

CMOD Wikidata App built on Django Framework for editing Wikidata with existing GeneWIki bot code

commonsshare

HydroShare is a collaborative website being developed for better access to data and models in the hydrologic sciences.

cq-notebooks

Notebooks for answering competency questions

d3-hierarchy

2D layout algorithms for visualizing hierarchical data.

data-ingest

null

dipper

Data Ingestion Pipeline for SciGraph

jbrowse

A modern genome browser built with JavaScript and HTML5.

kgx

knowledge graph exchange tools

Machine-Learning-Tutorials

machine learning and deep learning tutorials, articles and other resources

maps

null

monarch-app

Monarch web application and API

monarch_autocomplete

autocomplete component for Monarchinitiative.org built with Vue.js version 2

MonarchComponents

stand alone vue.js components for the Monarch Application

monarch_standalone_components

null

mygeneinfo_gh

MGI contributions

NCBI_FlatfileParsing

null

OLS-treeview

This is the standalone widget for the OLS treeview

ontobio

python library for working with ontologies and ontology associations

ont-review

null

recombination_analysis

null

RheaReactionParser

Python class to retrieve and link data from http://www.rhea-db.org/. Generates a dictionary for each reaction consisting of rhea id, ec number and chebi ids for each reaction constiutent.

sequence_tools

.fastq reads containing variants from a draft genome are sequesterded, categorized and counted by variant.

single-read-mapping

Pipeline for preparing and mapping *.fastq data to reference mapping genome of small, prokaryotic or viral genomes, with low diversity.

SPARQLS

null

text_mined_annotations

null

variant_table_component

vue.js component for displaying variant data from myVarient.info. Input is ClinVar Varient id

vue_autocomplete

autocomplete component for Monarchinitiative.org built with Vue.js version 2

vue_autocomplete_demo

quick demo of a vue.js automplete

wikidatabots_gh

Wikidatabots source code

WikidataIntegrator

A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint

Wikidata_Reporting_Site

web app to host statistics on Su Lab Wikidata Bot contributions

wikigenomes_version2

New Layout and design, built on AngularJs

Commits To