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Login: ropensci

Company: null

Location: Berkeley, CA

email: info@ropensci.org

Blog: https://ropensci.org/

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Repositories

acme: ACME client for R
afs: null
agent: Store sensitive data such as API tokens
alm: R client for the Lagotto almetrics API platform - ARCHIVED ON CRAN
ambassador-packet: rOpenSci Ambassador materials
antiword: R wrapper for antiword utility
AntWeb: An R wrapper for the AntWeb API
antweb-guide: null
apistatus: api status dashboard
archeology: R clients for open archeology data
aRxiv: Programmatic interface to the Arxiv API
assertr: Assertive programming for R analysis pipelines
auunconf: repository for the Australian rOpenSci unconference 2016!
bbox: get a bbox
bib2df: Parse a BibTeX file to a tibble
bienapi: BIEN REST API
bienapidocs: null
bikedata: :bike: Load data from public hire bicycle systems
binomen: taxonomic name classes and parsing methods
biomartr: Genomic Data Retrieval with R
bittrex: A R Client for the Bittrex Crypto-Currency Exchange
biweekly: rOpenSci News
bmc: BMC interface for R
bold: Interface to the Bold Systems barcode website
bomrang: Australian Government Bureau of Meteorology Data From R
bowerbird: Keep a collection of sparkly data resources
brranching: I can haz all the phylogenies
canpaginate: canpaginate - paginate through REST APIs
cartographer: Interactive maps in R using d3-carto-map
ccafs: CCAFS GCM Data R Client (http://www.ccafs-climate.org/)
cchecksapi: CRAN checks API
challenge: Repo for the Open Science Challenge
charlatan: Create fake data in R
cheatsheets: ropensci cheatsheets
chromer: package for interacting with the chromosome counts database (CCDB) at http://ccdb.tau.ac.il http://ropensci.org
citations: null
citation_tracking: Notes on how we track citations of rOpenSci Software
citeulike: R interface to CiteULike.
ckanr: R client for the CKAN REST API
cld2: R Wrapper for Google's Compact Language Detector 2
cld3: Bindings to Google's Compact Language Detector 3 (experimental)
cleanEHR: Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical data from CC-HIC
clifro: Easily download and visualise climate data from CliFlo
codemetar: an R package for generating and working with codemeta
commcalls: rOpenSci Community Calls
comtradr: Functions for Interacting with the UN Comtrade API
cRegulome: An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer
cRegulome: An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer
crevents: Client for the Crossref Event Data API
crevents: Client for the Crossref Event Data API
crminer: Crossref Text Mining Client
crul: http client for R
cyphr: :shipit: Humane encryption
dappr: OPeNDAP client
dashboard: A R package dashboard generator
data-lens: null
dataone-restful: an interface to the dataone REST API (http://mule1.dataone.org/ArchitectureDocs-current/apis/MN_APIs.html)
datapack: An R package to handle data packages
datasets: Data sets
dbgrowth: database growth
dbhydroR: R interface to the South Florida Water Management District's DBHYDRO Database :sweat_drops::palm_tree:
dbhydroR: R interface to the South Florida Water Management District's DBHYDRO Database :sweat_drops::palm_tree:
defunct-obis: R interface to the Ocean Biogeographic Information System
dependencies: null
devroadmap: rOpenSci Development Roadmap
docker: Docker image for R on Ubuntu
docplyr: activity moved to docbi...see url
docs: rOpenSci Cookbook
DoOR.data: R package containing the data for the Database of Odor Responses
DoOR.functions: R package containing the functions used to build the Database of Odor Responses
dotgithubfiles: .github files
drake: An R-focused pipeline toolkit for reproducibility and high-performance computing
drat: drat repository for nightly builds of ropensci packages and common dependencies
dvn: Access to the Dataverse Network APIs from R
ecoengine: Programmatic interface to the Berkeley Ecoinformatics Engine
elastic: R client for the Elasticsearch HTTP API
elastic_data: Elasticsearch datasets ready for bulk loading
elasticdsl: Elasticsearch R DSL
elife: R interface to the eLife API
EML: Ecological Metadata Language interface for R: synthesis and integration of heterogenous data
EndoMineR: Endoscopic and Pathological data extraction for various endo-pathological data extraction
esa2013-open-data: Repository for the Open Data workshop
essurvey: Download data from the European Social Survey
etseed: etcd R client
europepmc: R Interface to Europe PMC RESTful Web Service
extractr: Extract text from pdfs using various web and local APIs
ezknitr: Avoid the typical working directory pain when using 'knitr'
fauxpas: fauxpas does http errors
fauxpas: fauxpas does http errors
FedData: Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
finch: Read Darwin Core Archive files
fingertipsR: null
fishbaseapi: Fishbase API
fishbaseapidocs: null
fishbasestatus: null
rfna: Web page scraping for eFloras, including the Flora of North America
rfna: Web page scraping for eFloras, including the Flora of North America
ftp: ftp for R
fulltext: An R api to search across and get full text for open access journals
fulltext-book: Manual for the fulltext package
gbif-backbone-sql: GBIF Darwin Core taxonomic backbone to SQLite
gbifchallenge: rOpenSci GBIF Challenge entry
gender: Predict Gender from Names Using Historical Data
genderdata: A data package for R containing historical datasets about gender
geoaxe: Chop up polygons into pieces
geoaxe: Chop up polygons into pieces
geobuf: R client for geobuf compressed geo/topo-json data
geojson: GeoJSON classes for R
geojsonio: Convert many data formats to & from GeoJSON & TopoJSON
geojsonlint: GeoJSON linting for R
geonames: R package for accessing the geonames.org API
geoops: geoops does spatial operations on GeoJSON
geoops: geoops does spatial operations on GeoJSON
geoparser: :book: :globe_with_meridians: R package for the Geoparser.io API :globe_with_meridians: :book:
getCRUCLdata: Use and Explore CRU CL v. 2.0 Climatology Elements in R
getlandsat: get landsat 8 images and metadata
getlandsat: get landsat 8 images and metadata
ggit: Git visualization tools for git2r
ggit: Git visualization tools for git2r
ghql: General purpose GraphQL R client
gigadb: null
gigadb: null
gistr: Interact with GitHub gists from R
git2r: R bindings to the libgit2 library
gitr: git/github from R
googleLanguageR: R client for the Google Translation API, Google Cloud Natural Language API and Google Cloud Speech API
gpapi: null
graphql: Bindings to libgraphqlparser for R
GSODR: Global Summary Daily Weather Data in R
gtfsr: Package for obtaining, validating, viewing, and storing GTFS (transit) data
hackathon-logistics: Just some internal logistics for the hackathon
hathi: R client for HathiTrust
hddtools: Hydrological Data Discovery Tools (R package for hydrology and open data)
helminthR: Accesses parasite occurrence records from the London Natural History Museum's Host-Parasite database, which contains over a quarter of a million helminth records.
hex-logos: null
historydata: Datasets for Historians
hoardr: manage cached files
http-testing-book: HTTP testing for R
hubot: Hubot scripts for rOpenSci
hunspell: High-Performance Stemmer, Tokenizer, and Spell Checker for R
hydroscoper: R interface to the Greek National Data Bank for Hydrometeorological Information
ICES: R interface to the ICES DATA PORTAL
IEEER: Search IEEE publications in R
iheatmapr: Complex, interactive heatmaps in R
ijtiff: An R Package for TIFF file I/O which plays nice with ImageJ
ImpactReport: ImpactStory report for rOpenSci packages
intern: rOpenSci Interns
internetarchive: Search the Internet Archive, retrieve metadata, and download files
isdparser: NOAA ISD/ISH file parser
jaod: R client for Directory of Open Access Journals API
jaod: R client for Directory of Open Access Journals API
jekyll-knitr: Jekyll plugin for parsing markdown content with knitr
jqr: R interface to jq
jsonld: R wrapper for jsonld.js JavaScript library
jsonvalidate: :heavy_check_mark::interrobang: Validate JSON
jumpin: how to jump in page for the ropensci website
knitr-ruby: Ruby wrapper for the knitr R library
landscapetools: ? R package for some of the less-glamorous tasks involved in landscape analysis ?
lawn: turf.js R client
lingtypology: R package for linguistic cartography and typological databases search
logos: null
lq: list queries
magick: Magic, madness, heaven, sin
mapr: Map species occurrence data
maptools: CRAN Task View for mapping tools
mdextract: package to extract metadata from data
microdemic: microsoft academic client
microdemic: microsoft academic client
minutes: rOpenSci leadership meeting minutes
mocker: Cache API calls to the web
mocking: null
monkeylearn: :monkey: R package for text analysis with Monkeylearn :monkey:
mregions: MarineRegions R client
mregions: MarineRegions R client
musemeta: R Client for scraping museum metadata
mutant: null
natserv: NatureServe R client
neotoma: Programmatic R interface to the Neotoma Paleoecological Database.
neurobio: R clients for open neurobiology data
NLMR: ? R package to simulate neutral landscape models ?
NLMR: ? R package to simulate neutral landscape models ?
NLMR: ? R package to simulate neutral landscape models ?
NLMR: ? R package to simulate neutral landscape models ?
nneo: NEON API Client
nneo: NEON API Client
nodbi: Document DBI connector for R
nomisr: Access UK official statistics from the Nomis database through R.
oai: OAI-PMH R client
onboarding: rOpenSci Onboarding
onboarding-meta: For organizing onboarding-related projects
onekp: Access sequences from the 1000 Plant Initiative (1KP)
opencage: :globe_with_meridians: R package for the OpenCage API -- both forward and reverse geocoding :globe_with_meridians:
opencontext: null
opendata: CRAN OpenData Task View
open-science-with-R: Writing the rOpenSci book on github
originr: Species origin data from the web in R
osmdata: R package for downloading OpenStreetMap data
osmplotr: Data visualisation using OpenStreetMap objects
ots: ocean time series datasets
ozunconf17: Website for 2017 rOpenSci Ozunconf
PackageDevelopment: Task View: PackageDevelopment
packaging_guide: rOpenSci Style Guide
paleobioDB: R interface to the Paleobiology Database
pangaear: R client for the Pangaea database
patentsview: An R client to the PatentsView API
pdftools: Text Extraction, Rendering and Converting of PDF Documents
peg: null
phylocomr: Phylocom R interface
phylodiv: null
plater: Tools to make it easy to work with microtiter plate-shaped data
plater: Tools to make it easy to work with microtiter plate-shaped data
pleiades: R client for Pleiades DB (https://pleiades.stoa.org/home)
plotdap: null
plotly: An interactive graphing library for R
plotly-test-table: null
policies: rOpenSci Policies
PostcodesioR: API wrapper around postcodes.io - free UK postcode lookup and geocoder
posts: Draft posts for rOpenSci web
rppo: R package for accessing PPO data store
prism: Download data from the Oregon PRISM climate data project http://www.prism.oregonstate.edu/
proj: R wrapper for proj4js
pubchunks: Get chunks of XML format scholarly articles
qualtRics: Download qualtrics survey data directly into R!
rAltmetric: Query and visualize metrics from altmetric.com
randgeo: random WKT or GeoJSON
rAvis: rAvis: an R-package to download the information stored in ?proyectoavis?, a citizen science bird project.
rbace: BASE R client
rbace: BASE R client
rbhl: R interface to the Biodiversity Heritage Library (BHL) API
rbison: Wrapper to the USGS Bison API
rbraries: Libraries.io API client
rbraries: Libraries.io API client
rchie: An R parser for ArchieML
rcoreoa: CORE API R Client
rcrossref: R client for various CrossRef APIs
RCryptsy: Basic Public API for the Crypto-Currency exchange Cryptsy
rdat: An R interface to data Dat
rdat: An R interface to data Dat
rdatacite: Wrapper to DataCite metadata
rdataone: R package for reading and writing data at DataONE data repositories
rdataretriever: R interface to the Data Retriever
rdefra: rdefra: Interact with the UK AIR Pollution Database from DEFRA
rdflib: High level wrapper around the redland package for common rdf applications
rdopa: R client to Joint Research Centre's DOPA REST API
rdpla: DPLA R client
rDrop2: null
rdryad: R client for Dryad web services
rebird: Wrapper to the eBird API.
RedisAPI: R interface to the full hiredis API
redland-bindings: Redland librdf language bindings
reeack: Riak R client
refimpact: API wrapper for UK Research Excellence Framework 2014 Impact Case Studies Database
RefManageR: R package RefManageR
reml: This repository has moved to http://github.com/ropensci/EML
rentrez: talk with NCBI entrez using R
reol: Programmatic interface to the Encyclopedia of Life - http://eol.org/
reproducibility-guide: null
rerddap: R client for working with ERDDAP servers
reuropeana: R Client for Europeana
rfigshare: Programmatic interface for Figshare
rfishbase: R interface to the fishbase.org database
rfisheries: package for interacting with fisheries databases at openfisheries.org
rflybase: A wrapper to FlyBase data
rfna: Web page scraping for eFloras, including the Flora of North America
rfna: Web page scraping for eFloras, including the Flora of North America
rgauges: Interface to Gaug.es API
rgbif: Wrapper to the Global Biodiversity Information Facility API
rgbif_mcglinn: null
rgbif_mcglinn: null
rGEM: A wrapper around GEM data
rglobi: R library to access species interaction data of http://globalbioticinteractions.org
rgpdd: Interface to the Global Population Dynamics Database, http://www3.imperial.ac.uk/cpb/databases/gpdd
rhindawi: R interface to the Hindawi Journals metadata and corpus
riem: :airplane: :sunny: R package for accessing ASOS data via the Iowa Environment Mesonet :cloud: :airplane:
rif: Neuroscience Information Network R client
rImpactStory: Programmatic interface to the Total Impact API
rinat: A programmatic interface to iNaturalist
ritis: Integrated Taxonomic Information Service (ITIS) R client
rjsonapi: jsonapi R client
rMaps: Interactive Maps from R
RMendeley: Implementation of the Mendeley API in R (now on CRAN)
rmetadata: Get scholarly metadata from around the web.
RMETAR: A METAR decoder for R users, connecting to mdsplib (METAR Decoder Software Package Library - http://mdsplib.sourceforge.net/)
rnbn: Access to NBN data from R
RNeXML: Implementing semantically rich NeXML I/O in R
RNeXML_testfiles: Files for testing RNeXML
rnoaa: R interface to many NOAA data APIs
rnpn: R client for the National Phenology Network database API
ro: ropensci package manager
roadoi: Use oaDOI.org with R
roapi: ropensci restful api
roapistatus: null
ROAuth: OAuth implementation for R
roauthors: rOpenSci Authors/Maintainers Affiliations
robotstxt: robots.txt file parsing and checking for R
robotstxt: robots.txt file parsing and checking for R
robridgems: null
rodash: dashboard for monitoring status of APIs we wrap
rokit: ruby tools for inspecting GitHub repos
rokit: ruby tools for inspecting GitHub repos
ropenaq: :earth_americas: :earth_africa: :earth_asia: R package for the OpenAQ API :earth_americas: :earth_africa: :earth_asia:
rOpenSci: R interface for literature and data repositories
ropenscibin: windows binary pkg hosting on Amazon S3
ropenscibin: windows binary pkg hosting on Amazon S3
ropensciDemos: Package that demonstrates capabilities of our suite
ropensci.github.com: Project page for rOpenSci
ropensci_intro: Slide deck for a lightning talk about the rOpenSci project
ropensciToolkit: Helper functions for ropensci packages
ropkgs: Discover and install ropensci packages
rorcid: A programmatic interface the Orcid.org API
roregistry: ropensci registry
rostats: null
rotl: Interface to Open Tree of Life API
roweb: :no_entry: [DEPRECATED] Active at https://github.com/ropensci/roweb2
roweb2: rOpenSci website
rpensoft: Wrapper to PENSOFT journals web services.
rperseus: Get primary texts from the Perseus Digital Library
rplos: R client for the PLoS Journals API
rpmc: R interface to PubMed Central article metadata.
rppo: R package for accessing PPO data store
rppo: R package for accessing PPO data store
rpwt: Pensoft Writing Tool R client
rredlist: IUCN Red List API Client
rresync: null
rresync: null
rrlite: R interface to rlite https://github.com/seppo0010/rlite
rrricanes: Web scraper for Atlantic and east Pacific hurricanes and tropical storms
rrricanesdata: Supporting dataset for R package rrricanes
rrrpkg: Use of an R package to facilitate reproducible research
RSelenium: An R client for Selenium Remote WebDriver
r-shippable: Pre-install some packages for my R package CI+CD on Shippable.com
rsnps: Wrapper to a number of SNP web APIs
rspringer: Wrapper for the Springer Journals API
RStars: Access to the Digital Universe Data set
rtdar: R client for TDAR
rtematres: An API package to exploit vocabularies managed via a tematres thesaurus
rtika: R Interface to Apache Tika
rtimicropem: :mask: R Package for the Analysis of RTI MicroPEM Output Files :mask:
rusda: Interface to USDA Databases
rvertnet: Wrapper to the VertNet API
rWBclimate: R interface for the World Bank climate data
rzmq: R package for ZMQ
sandbox: Interface to many altmetrics data services.
sarsop: Wrappers for sarsop
screencasts: rOpenSci Screencasts
scrubr: Clean species occurrence records
seaaroundus: Access Sea Around Us catch data and view it as dataframes or stacked area charts
sheetseeR: A quick and easy interface to Google Docs + SheetSee.js
sheetseeR: A quick and easy interface to Google Docs + SheetSee.js
sofa: easy R interface to CouchDB
solrium: A general purpose R interface to Solr
spelling: Tools for Spell Checking in R
spocc: Species occurrence data toolkit for R
spsqlite: SQLite Spatial Client
ssh: Native SSH client in R
stplanr: R package providing functions and data access for transport research
suppdata: Grabbing SUPPlementary DATA in R
tabulizer: Bindings for Tabula PDF Table Extractor Library
tabulizerjars: Java '.jar' Files for 'tabulizer'
talks: null
taxa: taxonomic classes for R
taxize: A taxonomic toolbelt for R (https://ropensci.github.io/taxize/)
taxize-book: the taxize book (WIP)
taxizedb: Tools for Working with Taxonomic SQL Databases
taxizedbs: some database files for taxize sql connections
taxizesoap: taxize but for SOAP data sources
taxonomy: taxonomy R packages
taxview: Summarise and visualize data sets from wrt taxonomy
teaching: rOpenSci teaching materials
tesseract: Bindings to Tesseract OCR engine
testdat: A package to run unit tests on tabular data
testdat: A package to run unit tests on tabular data
textmine: rOpenSci textmining manuscript
textreuse: Detect text reuse and document similarity
textworkshop17: Text Workshop at the London School of Economics, April 2017
textworkshop18: null
tidyhydat: An R package to import Canadian hydrometric data and make it tidy
tif: Text Interchange Formats
tokenizers: A Consistent Interface to Tokenize Natural Language Text
traits: Species traits data
travis-goodpractice: Example .travis.yml files to run goodpractice on an R package
travis-restarts: Heroku app to restart rOpenSci Travis-CI builds
treeBASE: An R interface to the treeBASE API (now on CRAN)
ucipp: uci machine learning datasets
unconf14: Repo to brainstorm ideas (unconference style) for the rOpenSci hackathon.
unconf15: rOpenSci's San Francisco hackathon/unconf 2015
unconf16: rOpenSci's San Francisco hackathon/unconf 2016
unconf17: Website for 2017 rOpenSci Unconf
unconf18: null
unrtf: Wrapper for 'unrtf' utility to extract text from RTF documents
USAboundaries: Historical and Contemporary Boundaries of the United States of America
USAboundariesData: Datasets for the 'USAboundaries' package
usecases: Use cases for rOpenSci packages
user2016-tutorial: null
usgs_app: Shiny app to interact with USGS and other data
vcr: Record HTTP calls and replay them
visdat: Preliminary Exploratory Visualisation of Data
weathercan: R package for downloading weather data from Environment and Climate Change Canada
webchem: Chemical Information from the Web
webmockr: R library for stubbing and setting expectations on HTTP requests
webservices: CRAN WebTechnologies Task View
wellknown: WKT <-> GeoJSON
wicket: Speedy, standalone WKT utilities in R
wikitaxa: taxonomy data from Wikipedia/Wikidata/Wikispecies
wishlist: Wishlist for rOpenSci tools
workshops: rOpenSci workshop material
workshops-davis-2015-01: Presentation to D-RUG by @cboettig
workshops-duke-2014-02: Duke systematics workshop.
workshops-ESA-2014-08: Curriculum for the ESA2014 SPOCC workshop.
workshops-max-2016-04: null
workshops-melbourne-2013-10: rOpenSci workshop Melbourne October 8th, 2013
workshops-montreal-2013-12: Montreal QCBS workshop
workshops-norwich-2013-09: Workshop page for Data Science in R at Norwich
workshops-oxford-2013-09: Workshop repository for Oxford. September 11th, 2013
workshops-scio14-2014-02: SCIO14 workshop repo
workshops-sheffield-2013-09: Repo for Sheffield rOpenSci workshop
workshop-stanford-2014-06: rOpenSci workshop at Stanford University, Carnegie Institution for Science, June 18th
workshops-ubc-2014-02: Workshop at UBC on Feb 14, 2014
workshops-uga-2014-09: Workshop materials for the UGA workshop
workshops-unc-2014-02: UNC Workshop repo
workshops-zsl-2013-11: rOpenSci workshop at the Zoological Society of London
worrms: World Register of Marine Species R client
writexl: Portable, light-weight data frame to xlsx exporter for R
xslt: Extension of xml2 package for xsl transformations
zenodo: Deposit data (or any research object) into Zenodo
zenodo: Deposit data (or any research object) into Zenodo

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.