ropensci/rglobi

Name: rglobi

Owner: rOpenSci

Description: R library to access species interaction data of http://globalbioticinteractions.org

Created: 2014-04-30 03:49:39.0

Updated: 2017-08-11 14:20:58.0

Pushed: 2017-12-15 19:00:24.0

Homepage: null

Size: 178

Language: R

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README

rglobi

R library to access species interaction data of http://globalbioticinteractions.org

install

To install `rglobi` from CRAN:

all.packages("rglobi")

Or install development version:

all.packages("devtools")
ools::install_github("ropensci/rglobi")

examples

ary(rglobi)
nd all unique prey names of Homo sapiens
_of("Homo sapiens")$target_taxon_name
 a shortcut of
interactions_by_taxa(sourcetaxon='Homo sapiens', interactiontype='preysOn')$target_taxon_name

st of supported interactions types
interaction_types()

l known prey names and locations (latitude, longitude) where birds (Aves) preyed on rodents (Rodentia) in California
<- get_interactions_by_taxa(sourcetaxon = "Aves", bbox=c(-125.53344800000002,32.750323,-114.74487299999998,41.574361), targettaxon = "Rodentia", returnobservations=T)
tions <- cbind(obs$target_taxon_name, obs$latitude, obs$longitude)

Please see R help pages (e.g. `?get_interactions_by_taxa` and vignettes for more information.

tests

Tests can be executed using devtools package.

rkdir should be rglobi repo root directory (check with getwd())
stall dependencies 
ools::install('.')
ools::test()

This should reload the library, executes the test_that testcases and show test reports.

documentation

roxygen2 is used to generate .Rd and NAMESPACE by running:

rary(roxygen2)
ygenize(".")

Vignettes are generated using `knitrand ``markdown``` packages.

meta

Please report any issues or bugs.

This package is part of the rOpenSci project.