Name: worrms
Owner: rOpenSci
Description: World Register of Marine Species R client
Created: 2016-12-23 01:03:45.0
Updated: 2017-10-09 12:33:50.0
Pushed: 2018-01-05 19:57:25.0
Size: 85
Language: R
GitHub Committers
| User | Most Recent Commit | # Commits |
|---|
Other Committers
| User | Most Recent Commit | # Commits |
|---|
worrms is a R client for the World Register of Marine Species
More stable CRAN version
all.packages("worrms")
Development version
ools::install_github("ropensci/worrms")
ary("worrms")
by date
ecords_date('2016-12-23T05:59:45+00:00')
A tibble: 50 x 25
AphiaID url
* <int> <chr>
1 894298 http://www.marinespecies.org/aphia.php?p=taxdetails&id=894298
2 894301 http://www.marinespecies.org/aphia.php?p=taxdetails&id=894301
3 894297 http://www.marinespecies.org/aphia.php?p=taxdetails&id=894297
4 894302 http://www.marinespecies.org/aphia.php?p=taxdetails&id=894302
5 894296 http://www.marinespecies.org/aphia.php?p=taxdetails&id=894296
6 894299 http://www.marinespecies.org/aphia.php?p=taxdetails&id=894299
7 894303 http://www.marinespecies.org/aphia.php?p=taxdetails&id=894303
8 915236 http://www.marinespecies.org/aphia.php?p=taxdetails&id=915236
9 906769 http://www.marinespecies.org/aphia.php?p=taxdetails&id=906769
0 909454 http://www.marinespecies.org/aphia.php?p=taxdetails&id=909454
... with 40 more rows, and 23 more variables: scientificname <chr>,
authority <chr>, status <chr>, unacceptreason <lgl>, rank <chr>,
valid_AphiaID <int>, valid_name <chr>, valid_authority <chr>,
kingdom <chr>, phylum <chr>, class <chr>, order <chr>, family <chr>,
genus <chr>, citation <chr>, lsid <chr>, isMarine <int>,
isBrackish <lgl>, isFreshwater <lgl>, isTerrestrial <lgl>,
isExtinct <int>, match_type <chr>, modified <chr>
by a taxonomic name
ecords_name(name = 'Platanista gangetica')
A tibble: 3 x 25
AphiaID url
<int> <chr>
254967 http://www.marinespecies.org/aphia.php?p=taxdetails&id=254967
383571 http://www.marinespecies.org/aphia.php?p=taxdetails&id=383571
254969 http://www.marinespecies.org/aphia.php?p=taxdetails&id=254969
... with 23 more variables: scientificname <chr>, authority <chr>,
status <chr>, unacceptreason <lgl>, rank <chr>, valid_AphiaID <int>,
valid_name <chr>, valid_authority <chr>, kingdom <chr>, phylum <chr>,
class <chr>, order <chr>, family <chr>, genus <chr>, citation <chr>,
lsid <chr>, isMarine <int>, isBrackish <lgl>, isFreshwater <int>,
isTerrestrial <int>, isExtinct <lgl>, match_type <chr>, modified <chr>
by many names
ecords_names(name = c('Platanista gangetica', 'Coryphaena'))
[1]]
A tibble: 1 x 25
AphiaID url
<int> <chr>
254967 http://www.marinespecies.org/aphia.php?p=taxdetails&id=254967
... with 23 more variables: scientificname <chr>, authority <chr>,
status <chr>, unacceptreason <lgl>, rank <chr>, valid_AphiaID <int>,
valid_name <chr>, valid_authority <chr>, kingdom <chr>, phylum <chr>,
class <chr>, order <chr>, family <chr>, genus <chr>, citation <chr>,
lsid <chr>, isMarine <lgl>, isBrackish <lgl>, isFreshwater <int>,
isTerrestrial <lgl>, isExtinct <lgl>, match_type <chr>, modified <chr>
[2]]
A tibble: 2 x 25
AphiaID url
<int> <chr>
125960 http://www.marinespecies.org/aphia.php?p=taxdetails&id=125960
843430 <NA>
... with 23 more variables: scientificname <chr>, authority <chr>,
status <chr>, unacceptreason <chr>, rank <chr>, valid_AphiaID <int>,
valid_name <chr>, valid_authority <chr>, kingdom <chr>, phylum <chr>,
class <chr>, order <chr>, family <chr>, genus <chr>, citation <chr>,
lsid <chr>, isMarine <int>, isBrackish <int>, isFreshwater <int>,
isTerrestrial <int>, isExtinct <lgl>, match_type <chr>, modified <chr>
by common name
ecords_common(name = 'clam')
A tibble: 2 x 25
AphiaID url
<int> <chr>
141919 http://www.marinespecies.org/aphia.php?p=taxdetails&id=141919
141936 http://www.marinespecies.org/aphia.php?p=taxdetails&id=141936
... with 23 more variables: scientificname <chr>, authority <chr>,
status <chr>, unacceptreason <lgl>, rank <chr>, valid_AphiaID <int>,
valid_name <chr>, valid_authority <chr>, kingdom <chr>, phylum <chr>,
class <chr>, order <chr>, family <chr>, genus <chr>, citation <chr>,
lsid <chr>, isMarine <int>, isBrackish <lgl>, isFreshwater <lgl>,
isTerrestrial <lgl>, isExtinct <lgl>, match_type <chr>, modified <chr>
using the TAXMATCH algorithm
ecords_taxamatch(name = 'Platanista gangetica')
[1]]
A tibble: 1 x 25
AphiaID url
<int> <chr>
254967 http://www.marinespecies.org/aphia.php?p=taxdetails&id=254967
... with 23 more variables: scientificname <chr>, authority <chr>,
status <chr>, unacceptreason <lgl>, rank <chr>, valid_AphiaID <int>,
valid_name <chr>, valid_authority <chr>, kingdom <chr>, phylum <chr>,
class <chr>, order <chr>, family <chr>, genus <chr>, citation <chr>,
lsid <chr>, isMarine <lgl>, isBrackish <lgl>, isFreshwater <int>,
isTerrestrial <lgl>, isExtinct <lgl>, match_type <chr>, modified <chr>
attribute definition by ID
ttr_def(id = 1)
A tibble: 1 x 4
measurementTypeID measurementType CategoryID children
<int> <chr> <int> <list>
1 IUCN Red List Category 1 <data.frame [2 x 4]>
attribute data by AphiaID
ttr_data(id = 127160)
A tibble: 24 x 10
AphiaID measurementTypeID measurementType
* <chr> <int> <chr>
1 127160 23 Species importance to society
2 127160 23 Species importance to society
3 127160 23 Species importance to society
4 127160 23 Species importance to society
5 127160 23 Species importance to society
6 127160 23 Species importance to society
7 127160 23 Species importance to society
8 127160 23 Species importance to society
9 127160 23 Species importance to society
0 127160 23 Species importance to society
... with 14 more rows, and 7 more variables: measurementValue <chr>,
source_id <int>, reference <chr>, qualitystatus <chr>,
AphiaID_Inherited <int>, CategoryID <int>, children <list>
attributes grouped by a CategoryID
ttr_category(id = 7)
A tibble: 5 x 4
measurementValueID measurementValue measurementValueCode
<int> <chr> <lgl>
183 benthos NA
184 plankton NA
194 nekton NA
323 neuston NA
331 land (terrestrial) NA
... with 1 more variables: children <list>
AphiaIDs by attribute definition ID
ttr_aphia(id = 4)
A tibble: 50 x 2
AphiaID Attributes
* <int> <list>
1 11 <data.frame [1 x 10]>
2 55 <data.frame [2 x 10]>
3 57 <data.frame [2 x 10]>
4 58 <data.frame [2 x 10]>
5 59 <data.frame [2 x 10]>
6 63 <data.frame [2 x 10]>
7 64 <data.frame [2 x 10]>
8 69 <data.frame [2 x 10]>
9 90 <data.frame [2 x 10]>
0 91 <data.frame [2 x 10]>
... with 40 more rows
worrms in R doing citation(package = 'worrms')