ropensci/reol

Name: reol

Owner: rOpenSci

Description: Programmatic interface to the Encyclopedia of Life - http://eol.org/

Created: 2014-02-16 21:04:32.0

Updated: 2017-10-11 17:10:14.0

Pushed: 2017-12-18 17:30:29.0

Homepage: null

Size: 454

Language: R

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README

Reol

Build Status codecov.io

Reol - Interface to the Encyclopedia for Life
Installation

Stable version from CRAN

all.packages("Reol")

or, Development version from GitHub

all.packages("devtools")
ools::install_github("ropensci/reol")
Examples
ary("Reol")
(MyEOLs)

Provider count

iderCount(MyEOLs[6], verbose=TRUE)
                                                        [,1]
ntegrated Taxonomic Information System (ITIS)              1
BIF Nub Taxonomy                                           1
UCN Red List (Species Assessed for Global Conservation)    1
CBI Taxonomy                                               1
pecies 2000 & ITIS Catalogue of Life: April 2013           1
         Integrated Taxonomic Information System (ITIS) 
                                                      1 
                                      GBIF Nub Taxonomy 
                                                      1 
UCN Red List (Species Assessed for Global Conservation) 
                                                      1 
                                          NCBI Taxonomy 
                                                      1 
      Species 2000 & ITIS Catalogue of Life: April 2013 
                                                      1

Download data

<- DownloadSearchedTaxa(c("Anolis_carolinensis", "Anolis garmani"), to.file=FALSE, exact=TRUE)
1] "eol795869 saved as R object"
1] "eol1055934 saved as R object"

Then parse

<- GatherDataObjectInformation(res)
1:6, 1:6]
               Taxon  eolID                     dataObjectID
 Anolis carolinensis 795869 e1034e748a8bc9e9828ddede77bc9bab
 Anolis carolinensis 795869 74c855fd7ec1b579505cf3774cd03bf5
 Anolis carolinensis 795869 d48f7b24ebac13339a43aea3ec524416
 Anolis carolinensis 795869 0ecf604ab616f4e7f895da90c861cf28
 Anolis carolinensis 795869 fcb91b611541d29d311bf8ea0bd112d3
 Anolis carolinensis 795869 5b9e32ea5f57e778ac1d9cadf7a7e738
 taxonConceptID                         dataType  mimeType
         795869 http://purl.org/dc/dcmitype/Text text/html
         795869 http://purl.org/dc/dcmitype/Text text/html
         795869 http://purl.org/dc/dcmitype/Text text/html
         795869 http://purl.org/dc/dcmitype/Text text/html
         795869 http://purl.org/dc/dcmitype/Text text/html
         795869 http://purl.org/dc/dcmitype/Text text/html
Meta

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.