ropensci/ropkgs

Name: ropkgs

Owner: rOpenSci

Description: Discover and install ropensci packages

Created: 2014-12-05 00:28:38.0

Updated: 2017-06-15 00:33:01.0

Pushed: 2017-11-17 21:57:39.0

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Size: 187

Language: R

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README

ropkgs

Project Status: Abandoned ? Initial development has started, but there has not yet been a stable, usable release; the project has been abandoned and the author(s) do not intend on continuing development.

ropkgs is an R client to discover and install rOpensci packages.

Installation
stall.packages("devtools")
ools::install_github("ropensci/ropkgs")

ary("ropkgs")
List all packages
<- ro_pkgs()
name

1] "ropensciregistry"

version

1] "1.2.6"

updated

1] "2017-11-13"

( out$packages )

      name    type        maintainer                    email     status
       alm package Scott Chamberlain  myrmecocystus@gmail.com       good
    AntWeb package       Karthik Ram    karthik.ram@gmail.com       good
     aRxiv package       Karl Broman kbroman@biostat.wisc.edu       good
       bmc package Scott Chamberlain  myrmecocystus@gmail.com       good
      bold package Scott Chamberlain  myrmecocystus@gmail.com       good
 citeulike package Scott Chamberlain  myrmecocystus@gmail.com deprecated
 installable ropensci_category   category on_cran on_bioc cran_archived
       FALSE        altmetrics altmetrics    TRUE   FALSE          TRUE
        TRUE       data-access    biology    TRUE   FALSE         FALSE
        TRUE        literature literature    TRUE   FALSE         FALSE
        TRUE        literature literature   FALSE   FALSE         FALSE
        TRUE       data-access    biology    TRUE   FALSE         FALSE
        TRUE        altmetrics altmetrics   FALSE   FALSE         FALSE
                                   url root  fork
       https://github.com/ropensci/alm      FALSE
    https://github.com/ropensci/AntWeb      FALSE
     https://github.com/ropensci/aRxiv      FALSE
       https://github.com/ropensci/bmc      FALSE
      https://github.com/ropensci/bold      FALSE
 https://github.com/ropensci/citeulike      FALSE
                                                                                                                                                                                          description
 R wrapper to the almetrics API platform developed by PLoS  API -other publishers have built on this and work out of the box: CrossRef, Copernicus Publishers, and the Public Knowledge Project (PKP)
                                                                                     Access data from the world's largest ant database. Maintained and developed by the California Academy of Science
                                                                                                                                                              Access to the aRxiv preprint repository
                                                                                                                                  An R interface to Biomed Central (BMC) search API and full text XML
                                                                                                                                                R client for BOLD Systems (Barcode Of Life Database).
                                                                                                                                                                             R interface to CiteULike
 badges
       
       
       
       
       

Filter packages

Filter by category

kgs(category = "history", simplify=TRUE)
          name    type status category on_cran cran_archived
7       gender package   good  history    TRUE         FALSE
3  historydata package   good  history    TRUE         FALSE
4     musemeta package   good  history   FALSE         FALSE
5        rdpla package   good  history    TRUE         FALSE
8   reuropeana package   good  history   FALSE         FALSE
09  genderdata package   good  history   FALSE         FALSE

Filter by maintainer

kgs(maintainer = "Lincoln Mullen", simplify=TRUE)
                name    type status                category on_cran
7             gender package   good                 history    TRUE
3        historydata package   good                 history    TRUE
7      USAboundaries package   good           history, maps    TRUE
8  USAboundariesData package   good           history, maps   FALSE
04      cartographer package   good                    maps   FALSE
09        genderdata package   good                 history   FALSE
11   internetarchive package   good     history, literature    TRUE
89        tokenizers package   good       text, text-mining    TRUE
48         textreuse package   good text-mining, literature    TRUE
   cran_archived
7          FALSE
3          FALSE
7          FALSE
8          FALSE
04         FALSE
09         FALSE
11         FALSE
89         FALSE
48         FALSE
Search for packages
kgs(query = "species", simplify = TRUE)
       name    type status                           category on_cran
6     rAvis package   good                            biology    TRUE
7      Reol package   good                            biology    TRUE
3     rgbif package   good                            biology    TRUE
4    rglobi package   good                            biology    TRUE
1     spocc package   good                            biology    TRUE
4    traits package   good                            biology    TRUE
55     mapr package   good                maps, visualization    TRUE
65 rredlist package   good        conservation, data, ecology    TRUE
66    rwdpa package   good        ecology, data, conservation   FALSE
72  spplist package   good             biology, ecology, data   FALSE
73   spplit package   good biology, ecology, data, literature   FALSE
21 wikitaxa package   good                  biology, taxonomy    TRUE
   cran_archived
6          FALSE
7          FALSE
3          FALSE
4          FALSE
1          FALSE
4          FALSE
55         FALSE
65         FALSE
66         FALSE
72         FALSE
73         FALSE
21         FALSE
Check if a package is on CRAN
ran('taxize')
taxize
1] TRUE
Install packages
all_ropensci(pkgs = 'musemeta')

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.