CD2H gitForager

Computational Omics and Systems Biology Group

Login: compomics

Company: null

Location: null

email: compomics.list@gmail.com

Blog: http://compomics.com/

Members

Repositories

cellmissy: Cell Migration Invasion Storage System.
CellMojo: null
cell-motility: Enabling the analysis of cell motility paths over time.
cluster-data-generation: Filter and export spectrum from PRIDE Archive
colims: A lims system to automate and expedite proteomics data management, processing and analysis.
commons: null
compomics-crowd: Library that allows for windows users to contribute to science through donating cpu cycles behind a screensaver
compomics-ensh: Java hibernate model for ensembl.
compomics.github.io: Compomics github website.
compomics-rover: A tool to visualize and validate quantitative proteomics data from different sources.
compomics-sigpep: Predicting peptide signatures for targeted proteomics.
compomics-utilities: Open-source java library for computational proteomics
CompPyTools: Small Python scripts developed in the CompOmics group
comp-query-constructor: A SQuireL SQL plugin that simplifies the creation of large queries.
COSS: CompOmics Spectral Similarity Search Tool
COSS: CompOmics Spectral Similarity Search Tool
COSS: CompOmics Spectral Similarity Search Tool
COSS: CompOmics Spectral Similarity Search Tool
dbtoolkit: Manipulating fasta sequence databases
denovogui: Graphical user interface for de novo sequencing of tandem mass spectra
elude-jwrapper: A Java API to make use of the retention time prediction functionality from elude.
fragmentation-analyzer: A standalone java tool for analyzing ms/ms fragmentation data.
icelogo: Next-generation visualization of protein consensus sequences by iceLogo.
icelogoserver: The server edition of the iceLogo tool.
ipython-notebook-server: Mini tornado server to provide multiple iPython notebook kernels from a single machine.
jsparklines: Sparklines for java tables
jtraml: Java implementation of the PSI-MS Transitions Markup Language (TraML) specification.
jwrapper-pepnovo: null
MAPPI-DAT: analysis and data management tool for high-throughput protein-protein interaction data generated from microarray-MAPPIT system
mascotdatfile: Java API for MS/MS search results by Mascot (Matrix Science).
meta-proteome-analyzer: MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
mitraq: Multiple iTRAQ/TMT Data Analysis
moFF: A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
moff-gui: A graphical user interface for the Modest Feature Finding algorithm (moFF)
MS2IO: Library to read and write ms2 spectrum file
ms2pip_c: MS�PIP: MS� Peak Intensity Prediction
MS2PIP_Server: Server application for MS2PIPc using Flask
ms-lims: Mass spectrometry based proteomics information management system.
mslimsdatfileextractor: simple jar for extracting dat files from mslims projects
ols-dialog: Java front end to the ontology lookup service (OLS)
omssa-parser: Java based parser for OMSSA OMX files
oxPTMScanner: null
pepshell: Visualization of conformational proteomics data.
PeptideMapper-Benchmark: Benchmark dataset for PeptideMapper paper.
peptide-shaker: Interpretation of proteomics identification results
peptizer: Automating manual validation of MS/MS search results.
pladipus: Platform for Distributed Proteomics Software
pride-asa-pipeline: Uniform annotation of identified spectra.
pride-converter: Data conversion tool for creating PRIDE XML
ProteinAssociationPair: null
proteinRoll: null
protein-shaker: Comparison of proteomics experiments
proteoscope: under construction...
QuantPridePep: Pipeline to bring peptdie quantification in Pride using moFF
reporter: Protein quantification based on reporter ions
ReSpinOnline: Online public viewer for ReSpin Results
scop3d: Sequence conservation of protein on 3D structure.
search-all-assess-subset: An implementation of the Search All, Asses Subset strategy for FDR estimation in shotgun proteomics.
search-all-assess-subset-paper: null
searchgui: Graphical user interface for proteomics identification search engines
secrete-site: null
spectrawl: A rich client tool used for browsing through spectra looking for specific mass differences.
spectrum_similarity: Scoring functions to compare MS/MS spectra
tabloidProteome: null
thermo-msf-parser: Parser and viewer for thermo msf files.
ThermoRawFileParser: null
toppr: The Online Protein Processing Resource.
xilmass: An algorithm to identify cross-linked peptides
xltools: null
xtandem-parser: Java based parser for X!Tandem output xml files

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.