compomics/MAPPI-DAT

Name: MAPPI-DAT

Owner: Computational Omics and Systems Biology Group

Description: analysis and data management tool for high-throughput protein-protein interaction data generated from microarray-MAPPIT system

Created: 2016-07-26 08:16:15.0

Updated: 2016-10-25 14:16:08.0

Pushed: 2017-05-17 09:38:14.0

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Size: 165956

Language: Python

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README

MAPPI-DAT

MAPPI-DAT workflow

Project Description

MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Analysis Tool) is an automated high-throughput data management and analysis system for microarray-MAPPIT system. MAPPI-DAT is capable of processing many thousand data points for each experiment, and comprising a data storage system that stores the experimental data in a structured way.

MAPPI-DAT application include graphical user interface. The analysis system is comprising of three steps: normalization, analysis and post filtration. The management system contains a back-end relational database and retrieval system, allowing user to store and download different projects using MAPPI-DAT interface with three main divisions for analysis, database submission and retrieval.

Citation

?MAPPI-DAT: data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform? Surya Gupta, Veronic De Puysseleyr, José Van der Heyden, Davy Maddelein, Irma Lemmens, Sam Lievens, Sven Degroeve, Jan Tavernier, and Lennart Martens. Bioinformatics 2017; 33 (9): 1424-1425, PMID: 28104627

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Downloads

Python project: MAPPI-DAT project can be downloaded from <a href=“http://genesis.ugent.be/uvpublicdata/MAPPI-DAT/MAPPI-DAT.zip” onclick=“trackOutboundLink('usage','download','mappidat','http://genesis.ugent.be/uvpublicdata/MAPPI-DAT/MAPPI-DAT.zip'); return false;“>MAPPI-DAT.

Windows stand-alone files: window compatible .exe files can be downloaded from:

database schema: MySQL schema for the MAPPI-DAT can be downloaded from here

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Usage

See the manual for further information about how to use the tool.

Sample data can be downloaded from here

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Project Support

MAPPI-DAT project is supported by:

| Compomics | VIB | Ghent University| |:–:|:–:|:–:| | compomics | vib | ugent |

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This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.