compomics/compomics-rover

Name: compomics-rover

Owner: Computational Omics and Systems Biology Group

Description: A tool to visualize and validate quantitative proteomics data from different sources.

Created: 2015-04-15 13:45:24.0

Updated: 2015-04-15 20:16:20.0

Pushed: 2015-06-23 09:21:59.0

Homepage:

Size: 10236

Language: Java

GitHub Committers

UserMost Recent Commit# Commits
Niels Hulstaert2015-04-15 20:16:19.07
Davy Maddelein2015-06-23 09:21:58.01

Other Committers

UserEmailMost Recent Commit# Commits
davy.maddelein@gmail.comdavy.maddelein@gmail.com@575ca3f6-14b7-11df-ae5d-f30dee00ba092013-10-18 09:34:45.06
kennyhelsenskennyhelsens@575ca3f6-14b7-11df-ae5d-f30dee00ba092010-02-23 12:59:37.02
ncolaert@gmail.comncolaert@gmail.com@575ca3f6-14b7-11df-ae5d-f30dee00ba092011-06-23 07:51:26.02
niklaas.colaert@ugent.beniklaas.colaert@ugent.be@575ca3f6-14b7-11df-ae5d-f30dee00ba092011-04-27 14:09:06.07

README

Rover

Project Description

Manual validation of regulated proteins in quantitative proteomics has always been a tedious process. Here we present Rover, a tool to facilitate this process. Rover accepts quantitative data from different sources such as Mascot Distiller and MaxQuant. In an intuitive environment, Rover visualizes the quantitative data in such a way that the user can select and validate proteins in comparisons to the whole experiment and in the context of the protein inference problem.

Citation

Colaert, N., Helsens, K., Impens, F., Vandekerckhove, J., Gevaert, K. (2010). Rover: a tool to visualize and validate quantitative proteomics data from different sources. Proteomics see PubMed.

Combination of different quantification can now also be done with Rover:

Colaert N, Van Huele C, Degroeve S, Staes A, Vandekerckhove J, Gevaert K, Martens L. Combining quantitative proteomics data processing workflows for greater sensitivity. Nat Methods. see PubMed.

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Download

You can find the latest version here.

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Project Support

The rover project is grateful for the support by:

| Compomics | VIB | Ghent University| |:–:|:–:|:–:| | compomics | vib | ugent |

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| IntelliJ | Netbeans | Java | Maven | |:–:|:–:|:–:|:–:| | intellij | netbeans | java | maven |

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This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.