compomics/jtraml

Name: jtraml

Owner: Computational Omics and Systems Biology Group

Description: Java implementation of the PSI-MS Transitions Markup Language (TraML) specification.

Created: 2015-04-01 12:41:34.0

Updated: 2017-05-09 13:10:55.0

Pushed: 2017-05-09 13:10:53.0

Homepage:

Size: 1508

Language: Java

GitHub Committers

User	Most Recent Commit	# Commits

Other Committers

User	Email	Most Recent Commit	# Commits

README

jTraML

• Project Description
• Downloads
• Usage
• Project Support

---

Project Description

The jTraML project is a Java API for the Proteomics Standards Initiative TraML data standard. The library provides fully functional classes for all elements specified in the TraML XSD document, as well as convenient methods to construct controlled vocabulary based instances required to define SRM transitions.

The use of jTraML is demonstrated via a two-way conversion tool between TraML documents and vendor specific files, facilitating the adoption process of this new community standard.

The library is released as open source under the permissive Apache2 license, and can be downloaded from the project in the Downloads section.

TraML files can also be converted online at http://iomics.ugent.be/jtraml.

Go to top of page

---

Downloads

Download jTraML 1.0.4 here.

Example Files

• Example transition file - TraML 0.9.5 document
• Example transition file - Agilent
• Example transition file - ABI QTRAP
• Example transition file - Thermo
• traml-core-0.9

Go to top of page

---

Usage

See the wiki for additional information on how to setup, run and configure jTraML.

Go to top of page

---

Project Support

The jTraML project is grateful for the support by:

| Compomics | VIB | Ghent University| |:–:|:–:|:–:| | | | |

Go to top of page

---

| IntelliJ | Netbeans | Java | Maven | |:–:|:–:|:–:|:–:| | | | | |

Go to top of page