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Workflow4Metabolomics

Login: workflow4metabolomics

Company: null

Location: France

email: contact@workflow4metabolomics.org

Blog: http://workflow4metabolomics.org/

Members

Repositories

anova: Anova for Galaxy
batch_correction: Correction for signal drift and batch effects
biosigner: Discovery of significant signatures from omics data
camera: CAMERA for Galaxy
checkformat: Checks the formats of the dataMatrix, sampleMetadata, and variableMetadata files
correlation_analysis: null
easyrlibrary-lib: Useful functions to make R script coding easier.
galaxy_ie_helpers: Helper scripts to work with Galaxy's Interactive Environments
gie-shiny: Shiny Server Galaxy Interactive Environment
gie-shiny-chromato: null
heatmap: Heatmap of the data matrix
ipo: IPO for Galaxy
isa2w4m: null
isa-extractor: null
lcmsmatching: null
metaMS: Processing GC-MS data with metaMS in Galaxy
mixmodel4repeated_measures: null
mixomics-galaxy-tools: Galaxy tool wrappers for mixOmics R package
mtbls-dwnld: null
multivariate: PCA, PLS(-DA), and OPLS(-DA)
nmr_alignment: null
nmr_annotation: ASICS-based annotation for 1H-NMR spectrum
nmr_bucketing: NMR Bucketing for Galaxy
nmr_preprocessing: null
normalization: Normalization for Galaxy
probmetab: ProbMetab For Galaxy
profia: null
qualitymetrics: Metrics and graphics to check the quality of the data
rGalaxyConnector: A couple of small wrapper functions around gie_helpers for use in interactive R sessions
risa: null
tool-bank-golm-lib_search: Tool using the Golm Library Search WS.
tool-bank-hmdb: HMDB MS search search by masses on HMDB online bank
tool-bank-lipidMaps: Search on LipidMaps online with masses.
tool-ext-dbsearch_golm: Search GCMS spectra from msp files into Golm Metabolome database.
tool-generic_filter: This tool allows to remove all samples and/or variables corresponding to specific values regarding designated factors or numerical variables, in datasets corresponding to dataMatrix, sampleMetadata and variableMetadata.
tools-w4m: null
tool-table_merge: This tool allows to merge the data matrix with one metadata table.
transformation: Transformation of the dataMatrix intensity values
univariate: Univariate parametric and non-parametric hypothesis testing with correction for multiple testing
w4m-config: This repository contains the W4M tool list
w4m-docker: Docker for Workflow4Metabolomics Galaxy platform.
w4m-vm: Virtual machine for Workflow4Metabolomics Galaxy platform.
workflow4metabolomics: Workflow4Metabolomics meta repository
wrapper-bank-massbank-spectrum_search: A MassBank spectrum searches wrapper : Search by pseudo-spectra on a High Quality Mass Spectral Database.
xcms: xcms for Galaxy

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.