Name: ipo
Owner: Workflow4Metabolomics
Description: IPO for Galaxy
Created: 2016-05-06 14:29:58.0
Updated: 2017-03-30 15:23:41.0
Pushed: 2017-08-03 09:55:57.0
Homepage: http://workflow4metabolomics.org/
Size: 19516
Language: R
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The Workflow4Metabolomics, W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
A Tool for automated Optimization of XCMS Parameters
Maintainer: Gunnar Libiseller
Citation:
Gunnar Libiseller, Michaela Dvorzak, Ulrike Kleb, Edgar Gander, Tobias Eisenberg, Frank Madeo, Steffen Neumann, Gert Trausinger, Frank Sinner, Thomas Pieber and Christoph Magnes. IPO: a tool for automated optimization of XCMS parameters. BMC Bioinformatics 16 (2015): 118. doi:10.1186/s12859-015-0562-8.
Homepage: https://github.com/glibiseller/IPO
Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
Homepage: https://galaxyproject.org/
Conda is package manager that among many other things can be used to manage Python packages.
install miniconda2
p://conda.pydata.org/miniconda.html
install the IPO R library using conda:
a install r-ipo r-batch
set an environment:
a create -n r-ipo r-ipo r-batch
activate the environment:
tivate r-ipo
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