Name: tool-bank-hmdb
Owner: Workflow4Metabolomics
Description: HMDB MS search search by masses on HMDB online bank
Created: 2016-03-11 08:30:17.0
Updated: 2016-11-23 14:38:46.0
Pushed: 2017-02-20 14:17:34.0
Homepage: null
Size: 247
Language: Perl
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The Workflow4Metabolomics, W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
Tool using the HMDB Library Search.
Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
Homepage: https://galaxyproject.org/
Conda is package manager that among many other things can be used to manage Python packages.
install miniconda2
p://conda.pydata.org/miniconda.html
install the tool dependencies using conda:
a install perl-lwp-simple perl-lwp-useragent perl-uri-url perl-soap-lite perl-list-moreutils perl-text-csv perl perl-html-template
set an environment:
a create -n tool-bank-hmdb perl-soap-lite perl-list-moreutils perl-json perl-html-template`
activate the environment:
tivate tool-bank-hmdb
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