Name: biosigner
Owner: Workflow4Metabolomics
Description: Discovery of significant signatures from omics data
Created: 2016-05-21 21:26:21.0
Updated: 2016-05-21 21:30:53.0
Pushed: 2017-06-06 15:38:21.0
Homepage: null
Size: 357
Language: R
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A Galaxy module from the Workflow4metabolomics infrastructure
Version: 2.2.6
Date: 2016-08-05
Author: Philippe Rinaudo and Etienne A. Thevenot (CEA, LIST, MetaboHUB, W4M Core Development Team)
Email: etienne.thevenot(at)cea.fr
Citation: Rinaudo P., Boudah S., Junot C. and Thevenot E.A. (2015). biosigner: A new method for the discovery of restricted and stable molecular signatures from omics data. Frontiers in Molecular Biosciences, in review.
Licence: CeCILL
Reference history: W4M00003_diaplasma
Funding: Agence Nationale de la Recherche (MetaboHUB national infrastructure for metabolomics and fluxomics, ANR-11-INBS-0010 grant)
Configuration file: biosigner_config.xml
Image files:
static/images/biosigner_workflowPositionImage.png
static/images/biosigner_workingExampleImage.png
Wrapper file: biosigner_wrapper.R
R packages
batch from CRAN
all.packages("batch", dep=TRUE)
biosigner from Bioconductor
ce("http://www.bioconductor.org/biocLite.R")
Lite("biosigner")
The code in the wrapper can be tested by running the runit/biosigner_runtests.R
R file
You will need to install RUnit package in order to make it run:
all.packages('RUnit', dependencies = TRUE)
See the W4M00001a_sacurine-subset-statistics or W4M00003_diaplasma shared histories in the Shared Data/Published Histories menu (https://galaxy.workflow4metabolomics.org/history/list_published)
INTERNAL MODIFICATION
INTERNAL MODIFICATION
INTERNAL MODIFICATION
NEW FEATURE