workflow4metabolomics/gie-shiny

Name: gie-shiny

Owner: Workflow4Metabolomics

Description: Shiny Server Galaxy Interactive Environment

Forked from: ValentinChCloud/shiny-GIE

Created: 2018-02-07 15:00:13.0

Updated: 2018-03-21 14:26:06.0

Pushed: 2018-03-21 14:31:21.0

Homepage: null

Size: 20

Language: R

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README

Docker Shiny Container

This repository allows to run Shiny in a docker container. This image can be used to integrate Shiny into Galaxy. A variety of different packages are pre-installed and can be used right away.

Table of Contents

• Context
• Galaxy Interactive Environment installation
• How to use this Docker image
• From the pre-built image
• Build the image locally
• How to interact with Galaxy
• Application list

Context [[toc]](#toc)

• Based on the work of ValentinChCloud Shiny GIE.
• Using the docker rocker/shiny to install Shiny.
• Adding Galaxy Connectors from erasche Docker RStudio Container to import/export datasets.
• Using the Galaxy IE helpers by bgruening.

Galaxy Interactive Environment installation [[toc]](#toc)

If you have not already installed your Galaxy Interactive Environment, you can follow the tutorial at the following link : Tutorial for GIE installation

How to use this Docker image [[toc]](#toc)

From the pre-built image [[toc]](#toc)

 quay.io/workflow4metabolomics/gie-shiny:latest

Build the image locally [[toc]](#toc)

• Build your own image

  Docker is a pre-requirement for this project. You can build the container with:

  cker build -t gie-shiny .
  

• And run it

  The build process can take some time, but if finished you can run your container with:

  cker run -p 3838:3838 -v /home/user/foo/:/import/ -t gie-shiny
  

  and you will have a running Shiny instance on http://localhost:3838/.

  How to interact with Galaxy [[toc]](#toc)

et(FILE_ID)
et(FILE_ID1, FILE_ID2, ...)
et(FILENAME, identifier_type = "name")
et(FILENAME1, FILENAME2 , ... , identifier_type = "name")

ut(FILENAME)
ut(FILENAME1, FILENAME2, ...)

Application list [[toc]](#toc)

• gie-shiny-chromato : This application allows to visualize TIC and BPC chromatograms.