cBioPortal

Login: cBioPortal

Company: null

Location: MSKCC

email: cbioportal@cbio.mskcc.org

Blog: http://cbioportal.org

Members

  1. Andy Dufilie
  2. Augustin Luna
  3. Cyriac Kandoth
  4. Fedde Schaeffer
  5. Gideon Dresdner
  6. Hongxin
  7. Ino de Bruijn
  8. JianJiong Gao
  9. Karthik Kalletla
  10. Onur Sumer
  11. Sander Tan
  12. null

Repositories

cancerhotspots
Cancer Hotspots
cbio-engine
next generation cBioPortal core framework
cbioportal
cBioPortal for Cancer Genomics
cbioportal-docker
Context to create cBioPortal docker images
cbioportal-f
null
cbioportal-frontend
React Frontend of cBioPortal :tada:
cbioportal-graphdb
null
cbioportal-neo4j
null
cbioportal-web-api-spec
Specification of web API of the cBioPortal
cgdsr
R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
clinical-attributes
null
clinical-data-dictionary
Clinical Attribute Web Service for retrieving clinical attribute names and metadata.
clinical-data-normalization
Tools and data relating to clinical data normalization efforts.
clinical-timeline
Use d3-timeline to visualize clinical data
common
Repository to hold common persistence/model modules & packages used by at least the web application and importer projects.
CPTAC-proteomics-pipeline
The research and processing repo for import of CPTAC data into cBioPortal
ctmole
null
datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
enhanced-fixed-datatable
null
fmi-converter
Foundation Medicine XML file to cBioPortal staging file converter.
gdc-et-pipeline
Spring-batch based system to extract and transform GDC hosted data to suitable cBioPortal file formats.
GSoC
Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects
igv.js
Lightweight html5 version of the Integrative Genomics Viewer
importer
Contains code for a cBioPortal data importer.
iViz
cBioPortal Study View
matlab
null
mutation-mapper
null
oncoprintjs
OncoPrint visualization
oncotree
null
oncotree-mapping
null
oql
Javascript implementation of OncoQuery Language, used in the cBioPortal for Cancer Genomics.
reactable
Fast, flexible, and simple data tables in React
session-service
null
swagger-js-codegen
A Swagger Codegen for typescript, nodejs & angularjs
This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.