Kimel Family Translational Imaging-Genetics Research Lab

Login: TIGRLab

Company: null

Location: Toronto, Ontario, Canada

email: tigrlab@camh.ca

Blog: http://imaging-genetics.camh.ca

Members

  1. Jon Pipitone
  2. ?uo??u

Repositories

AMICO_container
Signularity container for AMICO NODDI
ASDD
Code for ASDD analysis
asl-conn
Preprocessing of ASL data and connectivity analyses
bdnf-amygdala
analysis done for Wheeler et al 2017
cluster-glm
work done on hawco et al. 2017
dashboard
tigrlab dashboard development
datman
scripts for managing xnat, QC, and data analysis
documentation
null
dti_conn
dti connectivity using probabilistic and deterministic methods
enigmaDTI
A DTI QC Pipeline
epitome
scriptit modules for fmri analysis
external-dbgap
null
FeenICS
A pipeline for FrEquENcy-based Ica Cleaning of Spirals
fslpal
Utilities for running stats using FSL's tools (without using FSL's GUI)
get-civet-stats
Some scripts from Mallar / Melissa for getting Civet surface values within cortical atlases
HCP-Pipelines
null
minc-bpipe-library
Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines
mirtk_singularity
Singularity build for Medical Image Registration ToolKit (MIRTK)
ML
null
monitor_usage
a little script to keep our disk usage under control
myelin-map-hcp
working project for the myelin mapping procedure that will likely be integrated with ciftify and/or datman at some point
NI-ML
null
pbs-tools
Extra tools for managing jobs on PBS
qa-dti
quality assurance of DTI (EPI) sequences using spherical phantoms
qcmon
q?mon: gotta check 'em all
scriptit
a platform for bash pipeline development
spins-1yr-analysis
spins interm analysis scripts
stoppd_MRS
Spectroscopy analysis scripts
tigrlab.github.io
tigrlab website
tractconverter
Converter for different neuro-imaging file formats.
tractmapper
Map a DTI tract atlas to subject space and extract fibre coordinates
unring
null
whitematteranalysis
White matter tractography clustering and more...
wma-scripts
null
xbrain
classify individuals into cognitive groups, or biotypes (brain/behaviour)
xnat
A repo for scrips that live inside of our xnat VM
This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.