TIGRLab/bdnf-amygdala

Name: bdnf-amygdala

Owner: Kimel Family Translational Imaging-Genetics Research Lab

Description: analysis done for Wheeler et al 2017

Forked from: josephdviviano/bdnf-amygdala

Created: 2017-10-06 00:10:17.0

Updated: 2017-10-06 00:10:20.0

Pushed: 2017-01-26 19:35:16.0

Homepage: null

Size: 20

Language: Python

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README

Need to compare our simple correlation method with:

Some alternative approaches should be considered and/or compared, for example, the single value decomposition approaches or canonical correlation analysis. Please refer to Kang etal 2016 and Bowman etal 2012.

data required

raw functional data on surface (5 rois)

/archive/alumni/anne/current/PNC/FC_analysis/func_on_surface_smooth

surface space ROIs

/archive/alumni/anne/current/PNC/FC_analysis/CORTEX_masks_txt

functional data in volume space (amygdala)

/external/PNC/data/rsfc-awheel/data

volume space amygdala ROI

/archive/alumni/anne/current/PNC/FC_analysis/AMY_masks_ns_nii

OR

/archive/alumni/anne/current/PNC/FC_analysis/AMY_masks_ns_resampled_nii ?