TIGRLab/tractmapper

Name: tractmapper

Owner: Kimel Family Translational Imaging-Genetics Research Lab

Description: Map a DTI tract atlas to subject space and extract fibre coordinates

Created: 2017-04-13 17:04:02.0

Updated: 2017-04-13 17:04:30.0

Pushed: 2017-07-28 18:42:48.0

Homepage: null

Size: 20

Language: Python

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README

tractmapper

Converts a tract atlas to subject space and outputs the terminal coordinates of the fibers grouped by the tract.

Requires:

wm_register_to_atlas_new.py - https://github.com/SlicerDMRI/whitematteranalysis

                            module load whitematteranalysis/latest

tractconverter.py - https://github.com/MarcCote/tractconverter

                            module load tractconverter/latest

MIRTK.img - https://github.com/TIGRLab/mirtk_singularity

                            singularity container

Usage:

get_subject_tract_coordinates.py --help