TIGRLab/AMICO_container

Name: AMICO_container

Owner: Kimel Family Translational Imaging-Genetics Research Lab

Description: Signularity container for AMICO NODDI

Created: 2017-04-26 18:59:50.0

Updated: 2017-04-26 19:00:24.0

Pushed: 2017-05-01 14:36:42.0

Homepage: null

Size: 4

Language: Python

GitHub Committers

UserMost Recent Commit# Commits

Other Committers

UserEmailMost Recent Commit# Commits

README

Singularity container for AMICO

A singularity container implementing the “linear framework for Accelerated Microstructure Imaging via Convex Optimization (AMICO)“. Original implementation here.

~~Currently based on a repo fork, due to a very minor change.~~

Usage:

$singularity run amico.img -h

Run scripts are setup to map paths relative to the singularity /input folder. To map this folder to somewhere on your local file system, use the -B parameter. Mappings can be overridden by providing absolute paths, however dependent on the singularity setup local paths may not be available in the container.

$singularity run -B <path_to_study_folder>:/input run amico.img . <subject_folder>

Dependencies:

To run:
To build:
This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.