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Roman Valls Guimer�

Login: brainstorm

Company: UMCCR

Location: Melbourne, Australia

Bio: GPG: 08F80CB5

Blog: http://blogs.nopcode.org/brainstorm

Member of

Repositories

2015-11-30-swc_data: Software and Data carpentry at SciLifeLab 2015:
aircrack-ng: null
ansible: Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy. Avoid writing scripts or custom code to deploy and update your applications ? automate in a language that approaches plain English, using SSH, with no agents to install on remote systems. https://docs.ansible.com/ansible/
ansible-biostar: An Ansible playbook to automatize the deployment of a Biostar-based project using Docker containers.
ansible-elk: Ansible role for Elasticsearch ELK Stack
ansible-feedstock: A conda-smithy repository for ansible.
ansible-homebrew: Ansible role - Homebrew
ansible-ipfs-cluster: ipfs-cluster deployment ansible role
ansible-logstash: Ansible Playbook to Deploy a Baseline Logstash Shipper
ansible-neurostars.org: Ansible automation to deploy neurostars.org website (superseeded by ansible-biostar)
ansible-rackspace: Barebones ansible-rackspace playbook with dynamic inventory and local VirtualBox deployment
ansible-role-java: Ansible Role - Java.
ansible-role-miniconda: Ansilbe role to install the anaconda python distribution
ansible-role-tomcat6: Ansible Role - Tomcat 6.
ansible-training-content: Official Ansible Training Content
ansible-xnat: XNAT (http://www.xnat.org/) ansible playbook
argtable3: Argtable3 is a single-file, ANSI C, command-line parsing library that parses GNU-style command-line options.
arrow: Better dates & times for Python
arteria-packs: StackStorm packs to automate sequencing center operations
arteria-provisioning: Provisioning for the Arteria project
arvados: an open source platform for managing and analyzing biomedical big data
arvados-ansible: Deploy arvados components using ansible
assume-role: assume-role: a CLI tool making it easy to assume IAM roles through an AWS Bastion account
awesome-pipeline: A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
bc: Template for Software Carpentry bootcamp site repository.
bcbb: Incubator for useful bioinformatics code, primarily in Python and R
bcbio-nextgen: Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bcbio-nextgen-vm: Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
bcbio_pub: Initial publication for bcbio-nextgen
bcbio_validation_workflows: bcbio CWL and WDL validation workflows
bcftools: This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
bioconda-recipes: Conda recipes for the bioconda channel.
biostar-central: Biostar Q&A
blog: The radare2 blog, available on radare.today
brainblog: My blog(down)
brainstorm.github.io: BrainBlog
bss: Bthingie
bwa-nextflow-benchmark: Small test to compare AWS and HPC on a very simple workflow
cancer-hiveplots: Testing an alternative to Circos plots: http://www.hiveplot.net/
carvey_board: Inventables carvey board which supports PCB milling AutoLeveler probing
cgtd: Decentralized distributed database of cancer variants and clinical data.
cgt-orbitsearch: Tests on nodejs-vcf+ipfs+orbitdb
cloudbiolinux: CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
common-workflow-language: Repository for CWL Specfications
cookiecutter-reproducible-ngs: A cookiecutter template for reproducible research, tailored for use with next-generation sequencing projects
core: The ownCloud core
cross-compilers: Dockerfiles for cross compiling environments
crosstool-NG: crosstool-NG with support for Xtensa
cwltool: Common Workflow Language reference implementation
dablooms: scaling, counting, bloom filter library
dcc-ops: The UCSC Genomics Institute's Computational Genomics Platform (CGP). This repo contains the Docker compose-based deployment process.
django-browserid: Django application for adding BrowserID support.
dotfiles: @brainstorm does dotfiles
dotfiles-1: My dotfiles (bootstrapped with cider)
eirods-vagrant: Enterprise iRODS vagrant VM
esp82xx: Useful ESP8266 C Environment
esp82XX-basic: Basic project for the ESP82XX chip
esp82XX-basic-LMIC: Experiment on porting LMIC (LoRa) to a bare ESP82XX
esp-idf: Espressif IoT Development Framework. Official development framework for ESP32.
facs: Fast and Accurate Classification of Sequences using Bloom filters
gbl2ngc: No frills gerber to gcode converter.
gdown: Download a large file from Google Drive (curl/wget fails).
gemini: a lightweight db framework for disease and population genetics.
gitflow-tests: testing git
gqt: A genotype query interface.
GSoC: OBF Google Summer of Code
hdf5-and-spark: Example glue code for loading HDF5 data into Spark
Heimdall: Heimdall is a cross-platform open-source tool suite used to flash firmware (aka ROMs) onto Samsung Galaxy S devices.
homebrew: The missing package manager for OS X.
homebrew-science: :microscope: Scientific formulae for the Homebrew package manager
htslib: C library for high-throughput sequencing data formats
idrop: iDrop desktop and web GUI
ids-tools: INCF Dataspace utilities
iperf-feedstock: A conda-smithy repository for iperf.
ipython-cluster-helper: Tool to easily start up an IPython cluster on different schedulers.
irods-legacy: Fork of DICE irods-legacy
irods-vagrant: Sets up a Vagrant VM running Ubuntu 12.04 LTS with a minimal iRODS install.
joss: The Journal of Open Source Software
kgantt: An attempt to draw Gantt charts using Trello API and Google charts API
khmer: In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
logbook: A cool logging replacement for Python. Under construction
MultiQC: Aggregate results from bioinformatics analyses across many samples into a single report.
nipype: Workflows and interfaces for neuroimaging packages
opentracker: opentracker is a open and free bittorrent tracker project
pcgr: Personal Cancer Genome Reporter (PCGR)
pcgr-deploy: Deployment playbook for the Personal Cancer Genome Reporter: https://github.com/sigven/pcgr
pdc: PDC summer school 2010
puzzle: Variant caller GUI + genetic disease analysis
pystoruman: Scrapy web crawler for storumanenergy.se
python-highcharts: Use highchart.js to make plots in Python and IPython notebooks
python-ironicclient-feedstock: A conda-smithy repository for python-ironicclient.
python_koans: Python Koans - Learn Python through TDD
radare2: unix-like reverse engineering framework and commandline tools
radare2-dockers: radare2 docker services repository
radare2-release: Releasing is hard
radarecon2016: Slides for the radarecon 2016 in Barcelona: http://rada.re/con
rapi: Read aligner API
r-novice-inflammation: Software Carpentry introduction to R for novices using inflammation data.
scikit-allel-tests: Personal playground for scikit-allel
scilifelab: Misc code snippets for Science For Life Laboratory
shade-feedstock: A conda-smithy repository for shade.
simavr: simavr is a lean, mean and hackable AVR simulator for linux & OSX
slides_ipfs_2016: Presentation about IPFS and the GA4GH's Cancer Gene Trust
solve360: Solve360 API Python wrapper
so-simple-theme: A simple and clean responsive Jekyll theme for words and photos.
stackstorm-ansible: st2 content pack containing ansible integrations
stackstorm-pcgr: Personal Cancer Gene Reporter StackStorm Pack
stackstorm-pcgr: Personal Cancer Gene Reporter StackStorm Pack
staged-recipes: A place to submit conda recipes before they become fully fledged conda-forge feedstocks
svtools: Tools for processing and analyzing structural variants.
swig-python-skel: Basic skeleton of a OSX/Linux SWIG python interface binding
terraform-aws-lambda: Terraform module for AWS Lambda functions
test_bcbio_cwl: Test workflows, run scripts and data for bcbio Common Workflow Language integration
tiny-test-data: Super small biological datasets for unit testing
toil: A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
umccrise: Bcbio results umccrization
whitecat-console: A command line tool for send and receive files to Lua RTOS compatible boards without an IDE
workflows: Community maintained workflows & tools (with examples)

Commits To

Repository	Most Recent Commit	# Commits
brainstorm/ansible-xnat	2014-10-07 08:27:44.0	42
erasche/argparse2tool	2016-05-31 12:38:31.0	4
cancergenetrust/cgtd	2017-06-06 17:58:53.0	20
brainstorm/slides_ipfs_2016	2016-11-14 19:41:30.0	2
BioMedIA/ansible-xnat	2014-10-07 08:27:44.0	42

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.