Google Genomics

Login: googlegenomics

Company: null

Location: null

email: google-genomics-discuss@googlegroups.com

Blog: http://googlegenomics.readthedocs.org/

Members

1. Cassie Doll
2. CH Albach
3. Craig Citro
4. Elmer Garduno
5. Garret Kelly
6. Garrick Evans
7. Ilia Tulchinsky
8. John Lucena
9. Matt Sooknah
10. Nicole Deflaux
11. Rick Byers

Repositories

api-client-android

A sample Android app that calls the Google Genomics API.

api-client-javascript

A simple web application that demonstrates how javascript can be used to fetch data from the Google Genomics APIs.

api-client-python

Provides a simple genome browser that pulls data from the API in Python.

beacon-go

AppEngine implementation of the Beacon API from the Global Alliance for Genomics and Health written in Go.

bigquery-examples

Advanced BigQuery examples on genomic data.

bioconductor-workshop-r

R package containing instructional materials for using GoogleGenomics Bioconductor and bigrquery packages.

bunny-logs

Simple log file analysis, with support for Dataflow.

cloudml-examples

Examples of using CloudML with genomic data.

codelabs

Codelabs demonstrating usage of several tools and systems on genomic data.

dataflow-java

Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.

datalab-examples

Example Cloud Datalab iPython Notebooks for genomics use cases.

denovo-variant-caller-java

A de novo variant caller which uses information from a mother, father and child trio with a bayesian inference method.

dockerflow

Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API

dsub

Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

dsub

Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

elasticluster

null

gatk-tools-java

Tools for using Picard and GATK with the Google Genomics API.

gce-images

Scripts that create a Google Compute Engine image containing a set of popular genomics software.

gcp-variant-transforms

GCP Variant Transforms

getting-started-bigquery

Examples of how to get started with genomics data in BigQuery in many languages.

getting-started-with-the-api

Examples of how to get started with the Google Genomics API in many languages.

grid-computing-tools

Scripts and samples for using Grid Engine on Google Cloud Platform.

htsget

Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage

linkage-disequilibrium

A suite of Java tools to calculate linkage disequilibrium between variants and load the results into BigQuery and BigTable.

pipelines-api-examples

Examples for the Google Genomics Pipelines API.

pipelines-tools

Tools for developing and running pipelines with the Genomics API

readthedocs

Documentation for the Google Genomics cookbook.

spark-examples

Apache Spark jobs such as Principal Coordinate Analysis.

utils-java

Common Java files for Google Genomics integrations.

variant-annotation

Use cloud technology to annotate human sequence variants in parallel.