Nicole Deflaux

Login: deflaux

Company: Google

Location: Seattle

Bio: null

Blog:

Blog:

Member of

1. Basespace
2. Bioconductor
3. Google
4. Google Cloud Platform
5. Google Genomics
6. ISB Cancer Genomics Cloud
7. Stanford Bioinformatics
8. Verily Life Sciences
9. null

Repositories

analysis-py-utils

Python utilities for BigQuery analyses.

api-client-android

A sample Android app that calls the Google Genomics API.

api-client-java

Provides a command line interface for API queries in Java.

api-client-python

Provides a simple genome browser that pulls data from the API in Python.

api-provider-local-java

An implementation of the Global Alliance Reads API which reads data from local BAM files.

bigquery-examples

Example BigQuery integrations. Includes both sql and R wrappers.

Bioc2015Workshop

GoogleGenomics workshop for Bioc2015 packaged up into a vignettes-only R package.

bioconductor-workshop-r

R package containing instructional materials for using GoogleGenomics Bioconductor and bigrquery packages.

bioconductor-workshop-r-OBSOLETE

R package containing instructional materials for using GoogleGenomics Bioconductor and bigrquery packages.

CatterPlot

Did you ever wish you could make scatter plots with cat shaped points? Now you can!

cloudml-examples

Examples of using CloudML with genomic data.

codelabs

Codelabs demonstrating usage of several tools and systems on genomic data.

codelabs-Obsolete

Codelabs in various languages demonstrating usage of several tools & systems upon genomics data.

dataflow-java

Provides several Google Cloud Dataflow pipeline examples as well as useful utility classes.

dataflow-java-OBSOLETE

Provides several Google Cloud Dataflow pipeline examples as well as useful utility classes.

datalab

Interactive tools and developer experiences for Big Data on Google Cloud Platform.

datalab-examples

Example Cloud Datalab iPython Notebooks for genomics use cases.

deflaux.github.io

null

denovo-variant-caller-java

A de novo variant caller which uses information from a mother, father and child trio with a bayesian inference method.

dsub

Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

examples-Python

Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.

examples-R

Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.

galaxy-tooldev-docs

null

gatk-tools-java

Tools for using Picard and GATK with the Google Genomics API.

gce-images

Scripts that create a Google Compute Engine image containing a set of popular genomics software.

genomewarp

null

getting-started-bigquery

Examples of how to get started with genomics data in BigQuery in many languages.

getting-started-with-the-api

Examples of how to get started with the Google Genomics API in many languages.

GoogleGenomics

Provides a simple R script that transforms API query results into GAlignments.

googva

null

grpc-java

The Java gRPC implementation. HTTP/2 based RPC

linkage-disequilibrium

A suite of Java tools to calculate linkage disequilibrium between variants and load the results into BigQuery and BigTable.

mvp_aaa_codelabs

Queries to perform qc and analysis on genomes in BigQuery

picard

A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.

pipelines-api-examples

Examples for the Google Genomics Pipelines API.

rocker

R configurations for Docker

scalable_analytics

Public collaboration of Scalable Single Cell Analytics

spark-distributed-louvain-modularity

Spark / graphX implementation of the distributed louvain modularity algorithm

spark-examples

Example spark integrations.

start-here

Documentation for all of the googlegenomics repositories.

utils-java

Common Java files for Google Genomics integrations.

utils-java-OBSOLETE

Common Java files for Google Genomics integrations.

variant-annotation

Use cloud technology to annotate human sequence variants in parallel.

Commits To