CD2H gitForager

Biological Informatics CoE @ Agriculture and Agri-Food Canada

Login: AAFC-BICoE

Company: null

Location: 960 Carling Ave., Ottawa, Ontario, Canada

email:

Blog: http://www.agr.gc.ca

Members

Repositories

acceptor: bash script for acknowledging of login messages & logging acceptance
acceptor: bash script for acknowledging of login messages & logging acceptance
acceptor: bash script for acknowledging of login messages & logging acceptance
acceptor: bash script for acknowledging of login messages & logging acceptance
android-mock-ws: Mock json web services for seqdb Android project
android-mock-ws: Mock json web services for seqdb Android project
android-mock-ws: Mock json web services for seqdb Android project
android-mock-ws: Mock json web services for seqdb Android project
android-real-ws: null
android-real-ws: null
android-real-ws: null
android-real-ws: null
annotation-scripts: Scripts for running and post-processing genome annotation tools and outputs from e.g. Maker and Interpro software.
annotation-scripts: Scripts for running and post-processing genome annotation tools and outputs from e.g. Maker and Interpro software.
annotation-scripts: Scripts for running and post-processing genome annotation tools and outputs from e.g. Maker and Interpro software.
annotation-scripts: Scripts for running and post-processing genome annotation tools and outputs from e.g. Maker and Interpro software.
ansible-cloudman-image: An Ansible role for building a machine image for CloudMan.
ansible-cloudman-image: An Ansible role for building a machine image for CloudMan.
ansible-cloudman-image: An Ansible role for building a machine image for CloudMan.
ansible-cloudman-image: An Ansible role for building a machine image for CloudMan.
AODP_releases: Releases of Automated Oligo Design Pipeline (AODP): wen.chen@agr.gc.ca
AODP_releases: Releases of Automated Oligo Design Pipeline (AODP): wen.chen@agr.gc.ca
AODP_releases: Releases of Automated Oligo Design Pipeline (AODP): wen.chen@agr.gc.ca
AODP_releases: Releases of Automated Oligo Design Pipeline (AODP): wen.chen@agr.gc.ca
back-lite: Lightweight backup automation, logging, and organisation system with support for multiple targets
basebox-packer: Packer templates for vagrant baseboxes
basebox-packer: Packer templates for vagrant baseboxes
basebox-packer: Packer templates for vagrant baseboxes
basebox-packer: Packer templates for vagrant baseboxes
biocluster-playbook: A playbook to set up a virtual cluster with a suite of bioinformatics packages.
biocluster-playbook: A playbook to set up a virtual cluster with a suite of bioinformatics packages.
biocluster-playbook: A playbook to set up a virtual cluster with a suite of bioinformatics packages.
biocluster-playbook: A playbook to set up a virtual cluster with a suite of bioinformatics packages.
blackbox-pipeline: Genome assembly and metadata collection
blackbox-pipeline: Genome assembly and metadata collection
blackbox-pipeline: Genome assembly and metadata collection
blackbox-pipeline: Genome assembly and metadata collection
blazegraph_extras: Scripts, small datasets and other files related to using and populating BlazeGraph.
blazegraph_extras: Scripts, small datasets and other files related to using and populating BlazeGraph.
blazegraph_extras: Scripts, small datasets and other files related to using and populating BlazeGraph.
blazegraph_extras: Scripts, small datasets and other files related to using and populating BlazeGraph.
bold2blast: null
bold2blast: null
bold2blast: null
bold2blast: null
cloudlaunch: Easily launch your own cloud servers for use with Galaxy and CloudMan
cloudlaunch: Easily launch your own cloud servers for use with Galaxy and CloudMan
cloudlaunch: Easily launch your own cloud servers for use with Galaxy and CloudMan
cloudlaunch: Easily launch your own cloud servers for use with Galaxy and CloudMan
cloudman: Easily create compute clusters on the Cloud.
cloudman: Easily create compute clusters on the Cloud.
cloudman: Easily create compute clusters on the Cloud.
cloudman: Easily create compute clusters on the Cloud.
crti-assembly-pipeline: Perl pipeline used to assemble genomes and transcriptomes and report sequencing and processing metadata in data releases.
crti-assembly-pipeline: Perl pipeline used to assemble genomes and transcriptomes and report sequencing and processing metadata in data releases.
crti-assembly-pipeline: Perl pipeline used to assemble genomes and transcriptomes and report sequencing and processing metadata in data releases.
crti-assembly-pipeline: Perl pipeline used to assemble genomes and transcriptomes and report sequencing and processing metadata in data releases.
docker-assembly: Assembly pipeline using Docker and SPAdes
docker-assembly: Assembly pipeline using Docker and SPAdes
docker-assembly: Assembly pipeline using Docker and SPAdes
docker-assembly: Assembly pipeline using Docker and SPAdes
dockerfiles: Repository housing Dockerfiles created by MBB at AAFC
dockerfiles: Repository housing Dockerfiles created by MBB at AAFC
dockerfiles: Repository housing Dockerfiles created by MBB at AAFC
dockerfiles: Repository housing Dockerfiles created by MBB at AAFC
docker-galaxy-stable: :whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
docker-galaxy-stable: :whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
docker-galaxy-stable: :whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
docker-galaxy-stable: :whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
docker-galaxy-stable-toolshed: galaxy stable with an empty dev toolshed enabled
docker-galaxy-stable-toolshed: galaxy stable with an empty dev toolshed enabled
docker-galaxy-stable-toolshed: galaxy stable with an empty dev toolshed enabled
docker-galaxy-stable-toolshed: galaxy stable with an empty dev toolshed enabled
elasticluster: Create clusters of VMs on the cloud and configure them with Ansible
elasticluster: Create clusters of VMs on the cloud and configure them with Ansible
elasticluster: Create clusters of VMs on the cloud and configure them with Ansible
elasticluster: Create clusters of VMs on the cloud and configure them with Ansible
Galaxy: Galaxy tool wrappers, tool dependencies, and workflows.
Galaxy: Galaxy tool wrappers, tool dependencies, and workflows.
Galaxy: Galaxy tool wrappers, tool dependencies, and workflows.
Galaxy: Galaxy tool wrappers, tool dependencies, and workflows.
galaxy-1: Data intensive science for everyone.
galaxy-1: Data intensive science for everyone.
galaxy-1: Data intensive science for everyone.
galaxy-1: Data intensive science for everyone.
galaxy-cloudman-playbook: Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server
galaxy-cloudman-playbook: Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server
galaxy-cloudman-playbook: Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server
galaxy-cloudman-playbook: Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server
galaxy-PwParam: changed files for addition of galaxy password parameter
galaxy-PwParam: changed files for addition of galaxy password parameter
galaxy-PwParam: changed files for addition of galaxy password parameter
galaxy-PwParam: changed files for addition of galaxy password parameter
gbif-ipt-vagrant: Package to quickly launch a GBIF IPT instance inside a VM
gbif-ipt-vagrant: Package to quickly launch a GBIF IPT instance inside a VM
gbif-ipt-vagrant: Package to quickly launch a GBIF IPT instance inside a VM
gbif-ipt-vagrant: Package to quickly launch a GBIF IPT instance inside a VM
gflow: Python command-line tool for running Galaxy workflows
gflow: Python command-line tool for running Galaxy workflows
gflow: Python command-line tool for running Galaxy workflows
gflow: Python command-line tool for running Galaxy workflows
git-example: null
git-example: null
git-example: null
git-example: null
HostPathogenLuceneIndexer: Create Lucene index from CSV file of Host-Pathogen data
HostPathogenLuceneIndexer: Create Lucene index from CSV file of Host-Pathogen data
HostPathogenLuceneIndexer: Create Lucene index from CSV file of Host-Pathogen data
HostPathogenLuceneIndexer: Create Lucene index from CSV file of Host-Pathogen data
HostPathogenLuceneSearcher: null
HostPathogenLuceneSearcher: null
HostPathogenLuceneSearcher: null
HostPathogenLuceneSearcher: null
hpdb: Agriculture and Agri-Food Canada?s (AAFC) internally developed Host Pathogen Database Web Application (hpdb) has been created to give access to the AAFC curated Canadian Host-Pathogen Database. The application currently allows the searching of Host Records, Pathogen Records and Host-Pathogen Records.
hpdb: Agriculture and Agri-Food Canada?s (AAFC) internally developed Host Pathogen Database Web Application (hpdb) has been created to give access to the AAFC curated Canadian Host-Pathogen Database. The application currently allows the searching of Host Records, Pathogen Records and Host-Pathogen Records.
hpdb: Agriculture and Agri-Food Canada?s (AAFC) internally developed Host Pathogen Database Web Application (hpdb) has been created to give access to the AAFC curated Canadian Host-Pathogen Database. The application currently allows the searching of Host Records, Pathogen Records and Host-Pathogen Records.
hpdb: Agriculture and Agri-Food Canada?s (AAFC) internally developed Host Pathogen Database Web Application (hpdb) has been created to give access to the AAFC curated Canadian Host-Pathogen Database. The application currently allows the searching of Host Records, Pathogen Records and Host-Pathogen Records.
iRODS: Ansible Scripts for Installation and Deployment of IRODS
iRODS: Ansible Scripts for Installation and Deployment of IRODS
iRODS: Ansible Scripts for Installation and Deployment of IRODS
iRODS: Ansible Scripts for Installation and Deployment of IRODS
irods-contrib: A pooled collection of community-contributed code that works alongside iRODS
irods-contrib: A pooled collection of community-contributed code that works alongside iRODS
irods-contrib: A pooled collection of community-contributed code that works alongside iRODS
irods-contrib: A pooled collection of community-contributed code that works alongside iRODS
ITISProxy: null
ITISProxy: null
ITISProxy: null
ITISProxy: null
ITISProxyLoader: Load ITIS proxy from ITIS SQLite3 database export
ITISProxyLoader: Load ITIS proxy from ITIS SQLite3 database export
ITISProxyLoader: Load ITIS proxy from ITIS SQLite3 database export
ITISProxyLoader: Load ITIS proxy from ITIS SQLite3 database export
LicenseFixer: A small script which will correct the license and copyright information for repositories in an organization or user space.
LicenseFixer: A small script which will correct the license and copyright information for repositories in an organization or user space.
LicenseFixer: A small script which will correct the license and copyright information for repositories in an organization or user space.
LicenseFixer: A small script which will correct the license and copyright information for repositories in an organization or user space.
matiri: Concurrent mysql backup script with metadata in Sqlite3;
matiri: Concurrent mysql backup script with metadata in Sqlite3;
matiri: Concurrent mysql backup script with metadata in Sqlite3;
matiri: Concurrent mysql backup script with metadata in Sqlite3;
MBB-Bio-Roll: Extended bioinformatics roll for the Rocks cluster
MBB-Bio-Roll: Extended bioinformatics roll for the Rocks cluster
MBB-Bio-Roll: Extended bioinformatics roll for the Rocks cluster
MBB-Bio-Roll: Extended bioinformatics roll for the Rocks cluster
MBB-Bio-Roll-Docker: Docker files for bioinformatics & related tools
MBB-Bio-Roll-Docker: Docker files for bioinformatics & related tools
MBB-Bio-Roll-Docker: Docker files for bioinformatics & related tools
MBB-Bio-Roll-Docker: Docker files for bioinformatics & related tools
metAMOS: A metagenomic and isolate assembly and analysis pipeline built with AMOS
metAMOS: A metagenomic and isolate assembly and analysis pipeline built with AMOS
metAMOS: A metagenomic and isolate assembly and analysis pipeline built with AMOS
metAMOS: A metagenomic and isolate assembly and analysis pipeline built with AMOS
NGSSampleManager: null
NGSSampleManager: null
NGSSampleManager: null
NGSSampleManager: null
nrc-ngs-downloader: nrc-ngs-downloader is a software written in Python. This software explores the NRC-LIMS website, downloads all the sequence files, and keeps the meta data of all the sequences in a sqlite database.
nrc-ngs-downloader: nrc-ngs-downloader is a software written in Python. This software explores the NRC-LIMS website, downloads all the sequence files, and keeps the meta data of all the sequences in a sqlite database.
nrc-ngs-downloader: nrc-ngs-downloader is a software written in Python. This software explores the NRC-LIMS website, downloads all the sequence files, and keeps the meta data of all the sequences in a sqlite database.
nrc-ngs-downloader: nrc-ngs-downloader is a software written in Python. This software explores the NRC-LIMS website, downloads all the sequence files, and keeps the meta data of all the sequences in a sqlite database.
parallel_itsx: Parallel implementation of ITSx
parallel_itsx: Parallel implementation of ITSx
parallel_itsx: Parallel implementation of ITSx
parallel_itsx: Parallel implementation of ITSx
puppet-manifests: Repository housing puppet manifests developped by MBB at AAFC
puppet-manifests: Repository housing puppet manifests developped by MBB at AAFC
puppet-manifests: Repository housing puppet manifests developped by MBB at AAFC
puppet-manifests: Repository housing puppet manifests developped by MBB at AAFC
pybold: Python bindings for Barcode of Life's Restful services
pybold: Python bindings for Barcode of Life's Restful services
pybold: Python bindings for Barcode of Life's Restful services
pybold: Python bindings for Barcode of Life's Restful services
qsub-omics: Functions to qsub common genomics and transcriptomics tools, including genome and transcriptome assembly and annotation
qsub-omics: Functions to qsub common genomics and transcriptomics tools, including genome and transcriptome assembly and annotation
qsub-omics: Functions to qsub common genomics and transcriptomics tools, including genome and transcriptome assembly and annotation
qsub-omics: Functions to qsub common genomics and transcriptomics tools, including genome and transcriptome assembly and annotation
reference-data-manager: Manages reference data for bioinformatics analysis.
reference-data-manager: Manages reference data for bioinformatics analysis.
reference-data-manager: Manages reference data for bioinformatics analysis.
reference-data-manager: Manages reference data for bioinformatics analysis.
RemoveSpecReplicate: Python script to remove specimen replicates from seqdb
RemoveSpecReplicate: Python script to remove specimen replicates from seqdb
RemoveSpecReplicate: Python script to remove specimen replicates from seqdb
RemoveSpecReplicate: Python script to remove specimen replicates from seqdb
rpmout: List RPMs on a system & generate JSON, HTML, LaTeX, and CSV
rpmout: List RPMs on a system & generate JSON, HTML, LaTeX, and CSV
rpmout: List RPMs on a system & generate JSON, HTML, LaTeX, and CSV
rpmout: List RPMs on a system & generate JSON, HTML, LaTeX, and CSV
rpmpaths: Scans a list of RPMs and generates PATH and :LD_LIBRARY_PATH based on locations of executables and libraries
rpmpaths: Scans a list of RPMs and generates PATH and :LD_LIBRARY_PATH based on locations of executables and libraries
rpmpaths: Scans a list of RPMs and generates PATH and :LD_LIBRARY_PATH based on locations of executables and libraries
rpmpaths: Scans a list of RPMs and generates PATH and :LD_LIBRARY_PATH based on locations of executables and libraries
Scalable-Galaxy-Env: null
Scalable-Galaxy-Env: null
Scalable-Galaxy-Env: null
Scalable-Galaxy-Env: null
seqdb-api: Services for managing laboratory workflows and DNA sequence tracking
sge-puppet: Sun Grid Engine provisioning script
sge-puppet: Sun Grid Engine provisioning script
sge-puppet: Sun Grid Engine provisioning script
sge-puppet: Sun Grid Engine provisioning script
snakemake-amplicon-metagenomics: Command line bioinformatics workflows, created with Snakemake workflow management tool.
snakemake-amplicon-metagenomics: Command line bioinformatics workflows, created with Snakemake workflow management tool.
snakemake-amplicon-metagenomics: Command line bioinformatics workflows, created with Snakemake workflow management tool.
snakemake-amplicon-metagenomics: Command line bioinformatics workflows, created with Snakemake workflow management tool.
snakemake-mothur: Example of a snakemake workflow implementation of the mothur MiSEQ SOP
snakemake-mothur: Example of a snakemake workflow implementation of the mothur MiSEQ SOP
snakemake-mothur: Example of a snakemake workflow implementation of the mothur MiSEQ SOP
snakemake-mothur: Example of a snakemake workflow implementation of the mothur MiSEQ SOP
snakemake-trimmomatic: Example of a snakemake encapsulation of trimmomatic
snakemake-trimmomatic: Example of a snakemake encapsulation of trimmomatic
snakemake-trimmomatic: Example of a snakemake encapsulation of trimmomatic
snakemake-trimmomatic: Example of a snakemake encapsulation of trimmomatic
specify-scripts: Specify data cleaning and reporting scripts
vagrant-aws: null
vagrant-aws: null
vagrant-aws: null
vagrant-aws: null
vagrant-galaxy: Vagrant provisioning a Galaxy development environment in an Ubuntu VM
vagrant-galaxy: Vagrant provisioning a Galaxy development environment in an Ubuntu VM
vagrant-galaxy: Vagrant provisioning a Galaxy development environment in an Ubuntu VM
vagrant-galaxy: Vagrant provisioning a Galaxy development environment in an Ubuntu VM
vagrant-galaxy-puppet: null
vagrant-galaxy-puppet: null
vagrant-galaxy-puppet: null
vagrant-galaxy-puppet: null
vagrant-specify7: Package to launch a Specify7 instance in a Vagrant VM
vagrant-specify7: Package to launch a Specify7 instance in a Vagrant VM
vagrant-specify7: Package to launch a Specify7 instance in a Vagrant VM
vagrant-specify7: Package to launch a Specify7 instance in a Vagrant VM
wet-boew-api-standards: Possible requirements for Government of Canada APIs based on the White House standards
wet-boew-api-standards: Possible requirements for Government of Canada APIs based on the White House standards
wet-boew-api-standards: Possible requirements for Government of Canada APIs based on the White House standards
wet-boew-api-standards: Possible requirements for Government of Canada APIs based on the White House standards
xlsx2redmine: Import a task list in XLSX format into redmine
xlsx2redmine: Import a task list in XLSX format into redmine
xlsx2redmine: Import a task list in XLSX format into redmine
xlsx2redmine: Import a task list in XLSX format into redmine
zygolife_phylogenomics: Zygolife Phylogenomic datatsets
zygolife_phylogenomics: Zygolife Phylogenomic datatsets
zygolife_phylogenomics: Zygolife Phylogenomic datatsets
zygolife_phylogenomics: Zygolife Phylogenomic datatsets

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.