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AAFC-BICoE/HostPathogenLuceneIndexer

Name: HostPathogenLuceneIndexer

Owner: Biological Informatics CoE @ Agriculture and Agri-Food Canada

Description: Create Lucene index from CSV file of Host-Pathogen data

Created: 2014-08-27 13:57:02.0

Updated: 2016-11-04 14:05:55.0

Pushed: 2016-11-07 18:38:08.0

Homepage: null

Size: 44

Language: Java

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README

HostPathogenLuceneIndexer

Create Lucene index from CSV file of Host-Pathogen data

Creating index

build the package

mvn clean package

Export the PATH info. I am cheating using my maven cache:

export CLASSPATH=/home/newtong/.m2/repository/org/apache/lucene/lucene-queryparser/4.8.1/lucene-queryparser-4.8.1.jar:/home/newtong/.m2/repository/ca/gc/agr/mbb/hostpathogen/hostpathogenlucenesearcher/hostpathogenlucenesearcher/1.0-SNAPSHOT/hostpathogenlucenesearcher-1.0-SNAPSHOT.jar:/home/newtong/.m2/repository/org/apache/commons/commons-csv/1.0/commons-csv-1.0.jar:/home/newtong/work/HostPathogenLuceneIndexer/target/hostPathogenLuceneIndexer-1.0-SNAPSHOT.jar:/home/newtong/.m2/repository/org/apache/lucene/lucene-core/4.10.0/lucene-core-4.10.0.jar:/home/newtong/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.0/lucene-analyzers-common-4.10.0.jar

Run the code. Make sure the built JAR is in your PATH:

java ca.gc.agr.mbb.hostpathogen.hostpathogenluceneloader.Main PATH_TO_CSV_FILES DESTINATION_LUCENE_INDEX_DIR

HostPathogenLuceneIndexer

Create Lucene index from CSV file of Host-Pathogen data

Creating index

build the package

mvn clean package

Export the PATH info. I am cheating using my maven cache:

Run the code. Make sure the built JAR is in your PATH:

java ca.gc.agr.mbb.hostpathogen.hostpathogenluceneloader.Main PATH_TO_CSV_FILES DESTINATION_LUCENE_INDEX_DIR

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.