CD2H gitForager

null

Login: sorgerlab

Company: null

Location: null

email: null

Blog: null

Members

Repositories

2016-10-06-harvard: Website for SWC workshop at Harvard October 6th/7th.
2017-10-30-harvard: Website for SWC workshop at Harvard Medical School, October 30-31 2017.
ashlar: ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
awscli-docker: Minimal Docker image based on Alpine Linux
bayessb: Bayesian model inference and parameter estimation for biological models
bfextractor: null
bfscanner: Bio-Formats Directory Scanner
bftools-docker: BioFormats Tools Docker Image
bioagents: Biological reasoning agents
bioentities: Resources for grounding biological entities from text and describing their hierarchical relationships.
bioentities: Resources for grounding biological entities from text and describing their hierarchical relationships.
bioentities_paper: null
bioentities_paper: null
biolit: null
CancerBrowser: HMS LINCS Cancer Browser
cheminformatics_tools: General tools and scripts for cheminformatics analysis and processing
cosmic_exploration: Tools to load COSMIC data files into Postgres and explore them
cycif: Processing and analysys for Cyclic Immunofluorescence (CycIF) microscopy images
cycif-benchmarking-docker-ashlar: Docker build for benchmarking ASHLAR for AWS Batch
cycif.org: cycif.org GitHub Pages Website
DarkKinome: null
datarail_archive: Old datarail work -- do not use this!
drug_browser: null
earm: Extrinsic Apoptosis Reaction Model
eydgahi_et_al_bayesian_estimation: Code and data to support "Properties of cell death models calibrated and compared using Bayesian approaches" by Eydgahi et al.
bioentities: Resources for grounding biological entities from text and describing their hierarchical relationships.
bioentities: Resources for grounding biological entities from text and describing their hierarchical relationships.
bioentities_paper: null
bioentities_paper: null
ImageRail: null
indra: Integrated Network and Dynamical Reasoning Assembler
indra_apps: null
indra_pertbio: null
kegg_metabolite_mapping: null
L1000chDir: L1000 Characteristic Direction
lin_elife_2018_tCyCIF_plots: Jupyter Notebook for plotting a subset of single cell data from Lin et al. 2018
matlab_dct_orchestra: Matlab Distributed Computing Toolbox workalike for the HMS Orchestra cluster
minerva-db: Minerva database components
minerva-infrastructure: Minerva Infrastructure
minerva-lib-python: Minerva Python Library
movie_mosaic: Builds an HTML gallery for an array of static images and associated movie clips.
niepel_2013: breast cancer signaling web project (DEPRECATED -- merged into hmslincs)
o2-deployment: Deployment of lmod modules and underpinning software on O2
omero.cloudarchive-cloudformation: OMERO Cloudarchive Cloudformation
omero.cloudarchive-docker: OMERO Cloudarchive Docker
omero_docker_centos: OMERO Docker Centos
omero_docker_centos_base: Docker image build for OMERO runtime dependencies
OMERO.forms: Extension to OMERO.web to enhance metadata input and provide provenance
omero-ms-image-region-docker: Docker image for image-region OMERO microservice
omero-ms-pixel-buffer-docker: Docker image for pixel-buffer OMERO microservice
omero-ms-thumbnail-docker: OMERO Thumbnail Microservice Docker Image
omero-nginx-docker: Nginx docker image for OMERO.web
omero-redis-docker: OMERO redis docker image
OMERO_scripts: Repository for OMERO related scripts
OMERO.webexporter: null
palmer-cell-2017: Source code and data for article "Combination cancer therapy can confer benefit via patient-to-patient variability without drug additivity or synergy" by Palmer et al.
phospho_network: Regression Model Based on Prior Network Knowledge
ramm_tox: Toxicology data analysis for Susanne Ramm's imaging / viability data
rasmodel: RAS Executable Model (REM)
rasmodel_org: Site content for rasmodel.org
rencell: null
sampattavanich_2013: single cell dynamics web project (DEPRECATED -- merged into hmslincs)
sampattavanich-cellsyst-2018: Source code for the article "Encoding growth factor identity in the temporal dynamics of a transcription factor under combinatorial regulation" by Sampattavanich et al.
sbpipeline: A workflow system for Systems Biology modeling based on open-source code, public standards and modern software practice.
sbwiki: Semantic Biology Wiki
SDCube_API: API used to create and manage HDF5-based SDCubes
searchlight: null
smallmoleculesuite: null
storage-report-viewer: null

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.