Name: cosmic_exploration
Owner: sorgerlab
Description: Tools to load COSMIC data files into Postgres and explore them
Created: 2014-03-20 14:29:46.0
Updated: 2014-03-20 14:30:32.0
Pushed: 2014-03-20 14:14:03.0
Homepage:
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Size: 146
Language: Shell
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README
cosmic_exploration
Tools to load COSMIC data files into Postgres and explore them
Instructions
- 1_fetch_data.sh
- 2_create_db.sh
- 3_create_views.sh
- get_mutations_summary.sh
- get_mutation_matrix.sh ; create pivot table from results
(read commented line in query for more details)
- get_mutations_all.sh
Data files
- cell_line_fixups.txt - corrections to normalize some COSMIC sample names
- marc_cell_lines.txt - cell lines from Marc to report on
- marc_genes.txt - genes from Marc to report on
