Notredame Lab

Login: cbcrg

Company: null

Location: Barcelona

email:

Blog: http://www.crg.eu/cedric_notredame

Members

  1. Martin Steinegger
  2. Pablo Prieto
  3. Paolo Di Tommaso
  4. null

Repositories

ampa-nf
Fast automated prediction of protein antimicrobial regions
benchfam
null
bengen
Docker based Multiple sequence aligners benchmark prototype
C4LWG-2018
Hands-on tutorial on Nextflow and Containers (Docker and Singularity). Paris 2018.
celegans-pergola-reproduce
C. elegans dataset Pergola paper analysis
companion
Pipeline for automatic eukaryotic parasite annotation
compss-sandbox
null
docker-bases
A collection of Docker base images
docker-benchmarks
A benchmarks of genomic pipelines running in Docker containers
dpa-analysis
Nextflow Pipeline for the analysis of Double Progressive Alignment (DPA)
grape-nf
Yet another Grape RNA-Seq analyses pipeline
hicmaptools
null
kallisto-nf
A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
kallisto-nf-reproduce
Experiment illustrating how Nextflow can make biological pipelines reproducible
leishdb
Leishprot DB web server -- http://leishdb.crg.cat/
L-GERT
Leishmania - GEnome Reporting Tool
lncRNA-Annotation-nf
A Nextflow lncRNA Annotation Pipeline based on STAR, Cufflinks and FEELnc
melanogaster-pergola-reproduce
D. melanogaster dataset Pergola paper analysis
mouse-pergola-reproduce
Mouse dataset Pergola paper analysis
msa-benchmark
null
mta-nf
Method for best alignment of evaluation trees
mwm
null
nextflow
A DSL for data-driven computational pipelines
paraMSA
Using uncertainty in multiple sequence alignments for phylogenetic trees and bootstrap support values
pergola
A tool for the visualization of behavioral data
pergola-reproduce
Wrapper of the three repositories reproducing Pergola paper analysis
phecomp
null
piper
RNA mapping pipeline
piper-nf
RNA mapping pipeline
psldoc2-nf
null
raxml-nf
RAxML pipeline
robusta
A meta multiple genome alignment package
sara-coffee-vm
null
tcoffee
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
tcoffee-client
Lightweight client for the T-Coffee web server
tcoffee-server
T-Coffee web server
unistrap
Reliability measure of inferred phylogenetic trees
This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.