Name: pergola-reproduce
Owner: Notredame Lab
Description: Wrapper of the three repositories reproducing Pergola paper analysis
Forked from: JoseEspinosa/pergola-reproduce
Created: 2017-11-28 16:30:20.0
Updated: 2017-11-28 16:57:58.0
Pushed: 2017-12-19 16:07:09.0
Homepage: null
Size: 100856
Language: null
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This repository contains the software, scripts and data to reproduce the results and figures decribed in the Pergola publication.
To reproduce C. elegans results go to worm
To reproduce D. melanogaster results go to fly
To reproduce M. musculus results go to mouse
In order to avoid any possible problem reproducing the results we recommend to install docker following the instructions on this link. Using the images we built guarantees that all the processes runs exactly in the same system environment and using the same software and libraries versions, you can read more about it here.
The pipelines followed in each of the three cases were coded using nextflow. Nextflow scripts allow to combine several scripting languages and the use of docker container out of the box. You can read more in nextflow paper doi:10.1038/nbt.3820. To intall nextflow just execute the following command.
-fsSL get.nextflow.io | bash