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Data Biosphere

Login: DataBiosphere

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Repositories

team-lighthouse-point: A repo that we use for cross-repo tickets, wiki, etc
team-lighthouse-point: A repo that we use for cross-repo tickets, wiki, etc
bagit-firecloud-lambda: Upload TOPMed metadata into a FireCloud workspace
cgp-boardwalk: The CGP's faceted portal
boardwalk: The CGP's faceted portal
bond: Account linking service
cgp-boardwalk: The CGP's faceted portal
cgp-dashboard: The Core's web dashboard including a faceted file browser
cgp-dashboard-service: A web API for powering the dcc-dashboard
cgp-data-store: Design specs and prototypes for the HCA Data Storage System ("blue box")
cgp-deployment: The UCSC Genomics Institute's Computational Genomics Platform (CGP). This repo contains the Docker compose-based deployment process.
cgp-deployment: The UCSC Genomics Institute's Computational Genomics Platform (CGP). This repo contains the Docker compose-based deployment process.
cgp-dss-azul-indexer: This is the indexer that consumes events from the Blue Box and indexes them into Elasticsearch.
cgp-dss-data-loader: Simple data loader for CGP HCA Data Store
clas: null
cla-test: null
commons-sample-data: A repo to track various TOPMed and other datasets
consent: Broad Institute Data Use Oversight System
consent-data-use: null
consent-ontology: Broad Institute Data Use Oversight System
consent-ui: Broad Institute Data Use Oversight System
data-explorer: null
data-explorer-indexers: null
DataSTAGE-milestones: null
cgp-data-store: Design specs and prototypes for the HCA Data Storage System ("blue box")
dcc-dashboard: The Core's web dashboard including a faceted file browser
cgp-dashboard: The Core's web dashboard including a faceted file browser
dcc-dashboard-service: A web API for powering the dcc-dashboard
cgp-dashboard-service: A web API for powering the dcc-dashboard
cgp-deployment: The UCSC Genomics Institute's Computational Genomics Platform (CGP). This repo contains the Docker compose-based deployment process.
cgp-deployment: The UCSC Genomics Institute's Computational Genomics Platform (CGP). This repo contains the Docker compose-based deployment process.
dos-azul-lambda: Provides access to DSS azul-index in the Data Object Service schemas
dos-dss-lambda: Access HCA DSS using GA4GH DOS
dos-gdc-lambda: Access Genomic Data Commons data using GA4GH libraries
dos-indexd-lambda: Access indexd using GA4GH DOS
dos-resolver-lambda: Implements a Data Object Service endpoint that can resolve from multiple services
cgp-dss-azul-indexer: This is the indexer that consumes events from the Blue Box and indexes them into Elasticsearch.
dss-azul-indexer: This is the indexer that consumes events from the Blue Box and indexes them into Elasticsearch.
dsub: Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
dsub: Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.
firecloud-app: null
identifier-interoperability: Guidelines for designing data platforms that support GUID resolution
job-manager: Job Manager API and UI for interacting with asynchronous batch jobs and workflows.
leonardo: Notebook service
metadata-schema: This repo is for the metadata schemas associated with the Data Biosphere
saturn-api: null
saturn-common: null
saturn-ui: null
team-calcium-operations: This is for team calcium project management
team-lighthouse-point: A repo that we use for cross-repo tickets, wiki, etc
team-lighthouse-point: A repo that we use for cross-repo tickets, wiki, etc
topmed-workflows: a place for topmed workflows

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.