DataBiosphere/cgp-dashboard

Name: cgp-dashboard

Owner: BD2K Center for Translational Genomics

Owner: Data Biosphere

Description: The Core's web dashboard including a faceted file browser

Created: 2016-11-02 22:10:23.0

Updated: 2018-04-30 08:28:52.0

Pushed: 2018-04-25 22:51:54.0

Homepage: null

Size: 3239

Language: JavaScript

GitHub Committers

User	Most Recent Commit	# Commits

Other Committers

User	Email	Most Recent Commit	# Commits

README

dcc-dashboard

The Core's web dashboard including a faceted file browser

This iteration of the File Browser uses the web API from https://github.com/BD2KGenomics/dcc-dashboard-service

Set up the web API

Follow the directions on https://github.com/BD2KGenomics/dcc-dashboard-service.

Locally run the Dashboard for Testing Purposes Only

Create a local host

Follow the directions on https://github.com/BD2KGenomics/dcc-dashboard-service.

Setup the Dashboard

Virtual environment and dependencies:

virtualenv env
source env/bin/activate
pip install --upgrade pip
pip install -r ./requirements.txt

See http://bitwiser.in/2015/09/09/add-google-login-in-flask.html

Within an interactive python session:

from app import db
db.create_all()
from werkzeug.serving import make_ssl_devcert
make_ssl_devcert('./ssl', host='localhost')

Environment variables needed:

# dcc-dashboard
export GOOGLE_CLIENT_ID=<FILLMEIN>
export GOOGLE_CLIENT_SECRET=<FILLMEIN>
export REDWOOD_ADMIN=<FILLMEIN>
export REDWOOD_ADMIN_PASSWORD=<FILLMEIN>
export REDWOOD_SERVER=storage.ucsc-cgl.org
export REDWOOD_ADMIN_PORT=8443
export DCC_DASHBOARD_HOST=localhost
export DCC_DASHBOARD_PORT=5000
export DCC_DASHBOARD_PROTOCOL=https

Run it:

python run.py

Installing the Dashboard on an Apache Server for Production

Note: This assumes you have already installed the web-service and Apache. See https://github.com/BD2KGenomics/dcc-dashboard-service for instructions on how to do this. Then come back here and follow the instructions below.

Clone the repository in the root directory, by doing:

clone https://github.com/BD2KGenomics/dcc-dashboard.git

Make the soft link:

 ln -sT ~/dcc-dashboard-service /var/www/html/dcc-dashboard

Go to the /etc/apache2/sites-enabled/000-default.conf file and add DocumentRoot /var/www/html/dcc-dashboard under ServerAdmin webmaster@localhost, like this:

tualHost *:80>
#Change as appropriate
    ServerName your-server-name.com 
    Header set Access-Control-Allow-Origin "*"
#Change as appropriate
    ServerAdmin webmaster@localhost
    DocumentRoot /var/www/html/dcc-dashboard

    WSGIDaemonProcess dcc-dashboard-service threads=5
    WSGIScriptAlias /api/v1 /var/www/html/dcc-dashboard-service/dcc-dashboard-service.wsgi
    <Directory dcc-dashboard-service>
             WSGIProcessGroup dcc-dashboard-service
             WSGIApplicationGroup %{GLOBAL}
             Order deny,allow
             Allow from all
    </Directory>
    ErrorLog ${APACHE_LOG_DIR}/error.log
    CustomLog ${APACHE_LOG_DIR}/access.log combined
rtualHost>

Restart the apache server by doing:

 apachectl restart