DataBiosphere/commons-sample-data

Name: commons-sample-data

Owner: Data Biosphere

Description: A repo to track various TOPMed and other datasets

Created: 2018-01-19 06:03:30.0

Updated: 2018-02-07 19:47:31.0

Pushed: 2018-02-01 00:59:57.0

Homepage: null

Size: 34

Language: Python

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README

commons-sample-data

A repo to track various TOPMed and other datasets.

TOPMed Open Access

This dataset (~100 WGS) was provided by Goncalo's team (Jonathon LeFaive), the original manifest can be found here:

gs://topmed-irc-share/public/TOPMed.public_samples.manifest.2017.11.30.txt

I then replicated this data in AWS and GCP in public buckets to make it easier to share with collaborators for testing.

AWS

See the TOPMed.aws.public_samples.manifest.2017.11.30.txt for the locations of the cram and index files on AWS.

GCP

See the TOPMed.gcp.public_samples.manifest.2017.11.30.txt for the locations of the cram and index files on GCP.