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Sol Genomics Network

Login: solgenomics

Company: null

Location: Ithaca, NY

email: null

Blog: http://solgenomics.net

Members

Repositories

Ambikon: core classes for Ambikon, used by both integration server and subsite APIs
Ambikon-IntegrationServer: Request broker/proxy for web app integration. Early days still.
arabidopsis: null
art: SGN artwork
avocado: null
Barcode-Code128: A Perl module to create barcodes in code 128 format, from
bea: Breeders Expression Atlas - For visualizing field plot phenotypes
Bio-AGP: null
bio-blast: low-level routines for dealing with BLAST formats and data
bio-chado-loader: Load biological data into the Chado database with Bio::Chado::Schema
bio-chado-schema: A standard DBIx::Class layer for the Chado database schema. Bootstrapped and updated using DBIx::Class::Schema::Loader.
bio-geneticrelationships: null
Bio-GenomeUpdate: Tools for updating a genome assembly
bio-gff3: fast, low-level GFF3 manipulation in Perl
bioinfocourse: Repository for data and scripts used for the BTI Plant Bioinformatics course
biosource: null
BrAPI_Android: null
BrAPI-Graphical-Filtering: Tool for filtering BrAPI ObservationUnits and Germplasm by Observation values
BrAPI-js: JavaScript BrAPI Client with support for asynchronous interdependent calls.
BrAPI-js: JavaScript BrAPI Client with support for asynchronous interdependent calls.
BrAPI-js: JavaScript BrAPI Client with support for asynchronous interdependent calls.
BrAPI-js: JavaScript BrAPI Client with support for asynchronous interdependent calls.
BrAPI-Pedigree-Viewer: null
BrAPI.pm: A Perl library for handling access to BrAPI data sources
BrAPI-Study-Comparison: null
BrApp-Wrapper: HTML Wrapper for SGN BrApp Examples
cassava: Cassavabase - A website for Cassava research
cassavabase-gobii: null
cassbase: The mason components for the cassbase database, a variation of cassavabase for the CASS project
catalyst-view-bio-seqio: Use Bio::SeqIO as a Catalyst view.
cea: Cassava Expression Atlas
Chado-Feature-Pages: search and browse the details of features stored in a Chado database
citrusgreening: user interface for the citrusgreening site https://citrusgreening.org/
CNSTools: Tools for conserved non-coding sequence identification
coconut: null
collect: ODK Collect is an Android app for filling out forms. It's been used to collect billions of data points in challenging environments around the world. Contribute and make the world a better place! ???
Cview: A comparative genetic map viewer
cxgn-corelibs: Various Modules relating to SGN
cyctools: Perl tool package to create pathologic files (.pf) for genomic and transcriptomic projects
d3-pedigree-tree: A D3.js layout for visualizing pedigree trees.
fernbase: null
fixture: database test fixture for cxgn databases
gbs: null
GenomicSelection: Code for the genomic selection module
gff3_validator: Validate GFF3 files
HadoopGBS: null
Hdf5: A REST-based SNP server with an Hdf5 backend
Intronfinder: Finds introns in transcript sequence
ITAG: Management modules for ITAG (International Tomato Annotation Group) pipeline
javacyc: Java interface to SRI Pathway Tools
jscview: null
kasp_designtool: null
kelp: The user interface for the kelp database
musabase: null
nelsonlab: null
NextGenGS: Genomic selection tools
opticon1004: null
pen: null
perlcyc: Perl interface to Pathway Tools
Phenome: Scripts and libraries for managing the SGN Phenome database
PhygOmics: High throughput phylogenomic analysis pipeline
Plack-App-Proxy: a streaming capable proxy for Plack
potatobase: Interface for the potatobase database
ppatens_expr: P. patens Expression Atlas custom parts
ricebase: null
rPackages: R packages
sgn: The code behind the Sol Genomics Network and Cassavabase website
sgn-biotools: general bioinformatics tools, non-project-specific
sgn-devtools: tools for SGN developers
sgn-home: per-developer versioned home directories for miscellaneous work
SGN_vagrant: null
SMMID: Code and content behind smmid.org
SNPbinner: SNPbinner is a utility for the generation of genotype binmaps based on SNP data across recombinant inbred lines.
solbase: Standalone installation of a genome/phenome website and database.
solgenomics: The mason components needed to run the solgenomics.net website
solgenomics.github.com: Solgenomics Github Website
solGS: genomic selection tool
starmachine: Shared management machinery for PSGI web apps running with Starman.
sweetpotatobase: Web interface for SweetPotatoBase website
Tea: code and database for the expression query, mining, analysis, and visualization tools
template: null
test: null
testing: Scratch repo to test jitterbug + git integration
theobroma: null
tomato_genome: Scripts and libraries for managing tomato genome data
VIGS: Stand Alone version of SGN VIGS Tool
vitisbase: vitisbase-specific mason modules
Weather: null
yambase: web interface for Yambase database
yapri: Yet Another Perl R Inteface.
zeabase: null

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.