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Aimin Yan

Login: aiminy

Company: Sylvester Comprehensive Cancer Center

Location: Miami, FL,USA

Bio: Aimin Yan is a statistician and computer scientist, and is interested in developing statistical methods and informatics tools to address Big Data problem

Blog: https://bioconductor.org/packages/devel/bioc/html/PathwaySplice.html

Member of

Sol Genomics Network

Repositories

3UTR-Seq: null
aiminy.github.io: null
atac_dnase_pipelines: ATAC-seq and DNase-seq processing pipeline
AtacSeq: null
awesome-single-cell: List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Bayesian-regression: A Bayesian method for genomic prediction and association study
bcbio-nextgen: Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
BigDataScript: BigDataScript: Scirpting language for big data
bioinf525: ATAC-seq lab for BIOINF525
biotoolbox: Tools for querying and analysis of genomic data
biotoolbox-extra: Specialized, outdated, and/or esoteric scripts from BioToolBox
CAFA-Toolset: A software package for managing the CAFA community experiment
callSomaticVariation: A repository to process and call somatic variation from NGS dataset
ChIPseeker: :dart:ChIP peak Annotation, Comparison and Visualization
ChipSeq: null
ChipSeq2: null
Chip-Seq-3: null
ChIP-seq-analysis: ChIP-seq analysis notes from Tommy Tang
clusterProfiler: :bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
Code_BTI: null
dapars: DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)
deindexer: an easy deindex tool for illumina multiple barcodes sequencing
DetainedIntrons: null
DrawVenn: null
ENM: This is a mathematical model for studying the temporal behaviour of protein structure on the coarse-grained level
ESCOP: A novel Empirical Side Chain Orientation Potential for native protein structure discrimination
example-clojure: Example Clojure integration with Codecov
FlowCytometryScripts: null
flowR: null
github-badges: Star / Fork badges for your GitHub Repository!
Git-Notes: null
goseq_test: null
GOSJ: GOSJ
IBD-GCA-model: An Identical-By-Descent(IBD) refined General Combining Ability(GCA) model for genomic selection
IBD-GCA-new: A Generalized General Combining Ability model for genomic selection
InPAS: This is a read-only mirror of the Bioconductor SVN repository. Package�Homepage:�http://bioconductor.org/packages/devel/bioc/html/InPAS.html Bug�Reports:�https://support.bioconductor.org/p/new/post/?tag_val=InPAS.
jupyterlab: JupyterLab computational environment. This is a very early preview, and is not suitable for general usage yet.
LOLA: Locus Overlap Analysis: Enrichment of Genomic Ranges
MAD: null
MobbedMatlab: null
ModifiedclusterProfiler: null
ModifiedDOSE: null
ModifiedJunctionSeq: null
msigdf: Molecular Signatures Database (MSigDB) in a data frame
multi-affy-py: Automatically exported from code.google.com/p/multi-affy-py
mywebsite: null
NetPathMiner: null
NMR-protein-structure-parser-: null
papaja: papaja (Preparing APA Journal Articles) is an R package that provides document formats and helper functions to produce complete APA manscripts from RMarkdown-files (PDF and Word documents).
ParentDaughter: null
PathwaySJ: null
PathwaySplice: null
pdb2002: A repository for protein structure data analysis
PePr: a peak-calling and differential analysis tool for replicated ChIP-Seq data
Phenome: Scripts and libraries for managing the SGN Phenome database
Projects: null
ProteinVi: A protein structure visualization tool
r4ds: R for data science
rank-aggregation: null
RNGS: null
SCCC-bioinformatics: null
SCCC-Code: This repository includes the codes for my research in SCCC
scFeatureFilter: null
scLVM: scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.
Seqware-BWA-Workflow: This is the BWA workflow used in the PanCancer project used to allign all the BAM files.
sgn: The code behind the Sol Genomics Network main website
sgn-home: per-developer versioned home directories for miscellaneous work
shields-badge-url-codecov: Creates Shields.io badge URLs for Codecov.
simplecov-shield: SimpleCov Formatter to generate coverage badge via shields.io
Sophia: null
SRA-data-submission: null
STPGA: Selection of Training Populations by Genetic Algorithm
tutorials: Explanations and code to analyze common types of big data
use-emacs: null
Use-Linux: null
Use-python: null
Use-R: null
zeabase: null
zeabase_local: null

Commits To

Repository	Most Recent Commit	# Commits

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.