solgenomics/Hdf5

Name: Hdf5

Owner: Sol Genomics Network

Description: A REST-based SNP server with an Hdf5 backend

Created: 2013-01-07 05:48:16.0

Updated: 2014-09-09 07:13:55.0

Pushed: 2014-07-09 03:21:57.0

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Size: 296

Language: Perl

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README

Hdf5 Server

A REST-based SNP server with an Hdf5 backend

To retrieve individual SNP calls, it implements a simple API based on the following URL structure:

5/get/< row | col >/<dataset>/<name>

“dataset” denotes an HDF5 file, name is the column or row name (marker name or accession id).

Returns a JSON structure names and scores as keys and values, in the following data structure:

response = { query: querydata, data: responsedata, };

An 'error' key is present if an error occurs, with the value as the human readable error message.

Examples:

• http://hdf5.sgn.cornell.edu/hdf5/get/col/hdf5_test/MARKER_5607

• http://hdf5.sgn.cornell.edu/hdf5/get/row/hdf5_test/39281

List available datasets:

5/datasets

JSON:

response = { datasets: datasetlist }