hackseq

Login: hackseq

Company: null

Location: Vancouver, BC

email: hackseq@gmail.com

Blog: www.hackseq.com

Members

1. Amanjeev Sethi
2. Burak Ogan Mancarci
3. Florian Privé

Repositories

2016_project_2

Design a tool to optimize the parameters of any command line tool

2016_project_4

Pseudo-WGS variant calling for common cell types aggregating ChIP-seq, RNA-seq and DHS from ENCODE and Roadmap Epigenomics data

2016_project_5

Evaluating epigenetic modifications in ChIP-seq and methylation data across cell types and states.

2016_project_6

Inferring sex chromosome and autosomal ploidy in NGS data

2016_project_8

Explore the use of 10x Genomics' Linked-Reads to unlock currently inaccessible parts of the genome

2016_project_9

Selection of tag SNPs for an African SNP array by LD and haplotype based methods

2017_project_5

Developing advanced R tutorials for genomic data analysis

chromeqc

ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads

2017_project_7

Improving multi-locus sequence typing software

2017_project_8

Analysis of tested guide RNA?s used for gene editing via CRISPR to predict optimal future guide sequences

2017_project_9

Using CollapseTree with Taxonomic Metadata

chromeqc

ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads

hackseq18

hackseq 2018 - [*]-omics hackathon. Vancouver, BC

hackseq_2017

Public files and discussions about hackseq 2017

hackseq_projects_2016

null

hackseq_projects_2017

null

hs18

hackseq18 sidesite

Indicator_contig_predictor

A two-way classifier to characterize metagenomes based on short and long read technologies

October_2016

Planning repository for Genomics Hackathon in Vancouver

phytools

null

vasco

Visualization of single cell RNA-seq data from tens of thousands of cells in real time