Bioinformatics Lab - Department of Computer Science - University Freiburg

Login: BackofenLab

Company: null

Location: Freiburg

email:

Blog: http://www.bioinf.uni-freiburg.de/?en

Members

  1. Björn Grüning
  2. Daniel Maticzka
  3. Eric Rasche
  4. Florian Eggenhofer
  5. Martin Raden
  6. Milad Miladi

Repositories

Accessory.Crispr
Comprehensive search for accessory proteins encoded with archaeal and bacterial Type III CRISPR-Cas gene cassettes reveals 39 new cas gene families
AlgoDat
Algorithm & Data structures
Benchmarkpilot_Bralibase
null
CAM
Constraint-based Atom-Atom Mapping
Course_Algorithms_in_Bioinformatics
Interfaces and materials for the programming course "Algorithms in Bioinformatics"
CPSP-tools
Constraint-based Protein Structure Prediction tools.
CRISPRleader
CRISPRleader takes a complete genome or draft genome as input and selects all possible CRISPR arrays in the correct orientation, and annotates the CRISPR leader boundaries.
docker-galaxy-clip
Docker image with fully functional Galaxy server with tools for CLIP analyses
docker-galaxy-graphclust
A pipeline for structural clustering of RNA secondary structures
ExpaRNA
Find the longest common subsequence of exact pattern matchings of two RNAs
FreiburgRnaTools
Issue tracking etc. for Freiburg RNA tools webserver
galaxy-freiburg-tools
List of tools include in Galaxy-FR
GGL
Graph Grammar Library
GraphClust
Structural clustering of local RNA secondary structures
INFO-RNA
A Fast Approach to Inverse RNA Folding Satisfying Sequence Constraints
IntaRNA
Efficient target prediction incorporating accessibility of interaction sites
IntaRNA-benchmark
Data and scripts to benchmark IntaRNA
LocalFold
LocalFold is a modification of the RNAplfold local folding algorithm.
MARNA
Enables Multiple Alignment of RNAs with fixed/given structures.
mechRNA
null
MEMERIS
MEMERIS integrates information about RNA secondary structures into the motif search to guide the search towards single-stranded regions.
MICA
Multiple Interval-based Curve Alignment
RNA-Playground
Visualize the inner workings of RNA Bioinformatics algorithms.
training-material
A collection of training material from offered Galaxy courses
This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.