Eric Rasche

Login: erasche

Company: @BackofenLab

Location: ::1

Bio: System Administrator

Blog: https://erasche.github.io/

Blog: https://erasche.github.io/

Member of

1. Bioinformatics Lab - Department of Computer Science - University Freiburg
2. Center for Phage Technology
3. Galaxy Genome Annotation
4. Galaxy Project
5. German Network for Bioinformatics Infrastructure
6. Intergalactic Utilities Commission
7. JBrowse Themes
8. useGalaxy.eu

Repositories

ab-to-statsd

null

ansible-galaxy-extras

Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.

Apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin

apollo-permissions-manager

Simple UI for managing Users, Groups, and Organisms in Apollo

argparse2tool

transparently build CWL and Galaxy XML tool definitions for any script that uses argparse

art-db

django database for art inventory (freelance)

barcode-server

stateless code128 + QR code server. Does what it says on the tin. Suuper boring.

bin-fasta

bin sequences based on length

bioblend

A python library for interacting with CloudMan and Galaxy API

bioconda-recipes

Conda recipes for the bioconda channel.

biojs-io-xmfa

Mauve/progressiveMauve XMFA parser for biojs

biojs-vis-mauve

Mauve/progressiveMauve XMFA visualisation for biojs

biojs-vis-xmfa

DEPRECATED: Use https://github.com/tamu-cpt/mauved3

biomaj

BioMAJ

biopython

Official git repository for Biopython (converted from CVS)

biotoolsDocs

Documentation for bio.tools and related community projects

Chado

the GMOD database schema

chado-angular-admin

AngularJS responsive admin page for Chado

chado-hackathon2007

null

chado-javatools

null

chado-jbrowse-connector

expose chado as a JBrowse compatible REST API

chado-postgraphql

null

chado-schema-builder

compiles copies of the Chado database and dumps the SQL for use in other tools.

chado-xmltools

null

CircosThreadTone

A halftone representation of an image made of thread in Circos

CMU_Arctic_Recorder

easily record CMU arctic phrases

crabby

A web page performance tester using Selenium with support for Graphite, Datadog, Riemann, and Prometheus

CuteR

null

deepTools

Tools to process and analyze deep sequencing data.

django-galaxydatasource

Django plugin to provide data as a Galaxy Datasource

docker-apollo

:whale: Apollo 2.X Docker Image

docker-chado

Chado database container

docker-circos

null

docker-django

null

docker-drupal

Drupal image based official php image, database information should be passed by environment variables or linked container. Drush is included

docker-galaxy-annotation

DEPRECATED

docker-galaxy-stable

Docker Images tracking the stable Galaxy releases.

docker-jasig-cas-proxy

Apache2 proxy layer for a docker image which enforced JASIG CAS authentication

docker-jbrowse

Docker image of JBrowse Genome Browser

docker-jupyter-notebook

:whale: :microscope: :books: Jupyter running in a docker container. This image can be used to integrate Jupyter into Galaxy

docker-postgraphql

simple docker container around https://github.com/calebmer/postgraphql

docker-postgrest

https://github.com/begriffs/postgrest in a docker container

docker-recipes

:whale: meta-repo of my docker images

docker-remote-user-proxy

Proxy requests and add REMOTE_USER set to a static value

docker-rstudio-notebook

RStudio running in a docker container. This image can be used to integrate RStudio into Galaxy

docker-tripal

Docker container for Tripal

docker-webapollo

:whale: WebApollo Docker Image

dotfiles

My rubbish dotfiles repo

erasche.github.io

personal site

fakeCAS

Simple static site that pretends it's a JASIG CAS server.

figlet2circos

Circos version of https://github.com/erasche/figlet2gff3

figlet2gff3

figlet/toilet to gff3

freiburg-galaxy-bot

null

galactic-radio-telescope

Galaxy Job Run Statistics

galaxy

Data intensive biology for everyone.

galaxy-apollo

MOVED: Apollo interface from Galaxy tools

galaxy-central

git repo tracking galaxy-central's mercurial repository (https://bitbucket.org/galaxy/galaxy-central)

galaxy-data_source-examples

Examples of Galaxy data_source servers

galaxy-ie-bash

null

galaxy-maps

null

galaxy-reports

ReactJS webapp for galaxy's reports

galaxy-site

Galaxy project website, aka Galaxy Community Hub

galaxy_tools

Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML

galaxy-tools

null

galaxy_tools-1

Tool Shed repositories maintained and developed by the EnginesOn organization

galaxy-video-datatypes

Datatypes for video formats in galaxy

galaxy-video-viz-plugin

Video player for use in Galaxy

galaxy-workflow-plotter

Plot "publication quality" "standards compliant" "" SVG files out of Galaxy workflows

galaxy-workflow-status

See the status of many simultaneous invocations of a single Galaxy Workflow

galaxyxml

XML Generation libraries for Galaxy Tool/ToolDeps XML

gccontent

A JBrowse plugin for plotting GC content

gene2accession2kyotocabinet

Converts gene2accession file provided by NCBI into a fast kyoto-cabinet database

gie-proxy

Galaxy Interactive Environment Proxy

github-issue-to-mailgun-gateway

Translates github issue comments to emails (via mailgun) and vice versa.

GMODTools

Extraction of GMODTools from Chado repository

gologme

Window and keylogger for personal activity tracking

gologme-frontend

Frontend for https://github.com/erasche/gologme

go-otp

golang OATH-TOTP Storage/Generator App

groene-thee

AngularJS + REST based Tripal alternative.

guanine

Galaxy stUdent AssessmeNt INfrastructurE

guanine-frontend

null

gulp-gh-pages

gulp plugin to publish contents to Github pages

gvl_commandline_utilities

Scripts for users of GVL cloud instances. These scripts configure GVL servers as command line bioinformatics platforms.

gx-cookie-proxy

Convert galaxysession cookies into REMOTE_USER

gx-package-caching-proxies

caching images and data for use in Galaxy TS

hello-world-interactive-environment

Simple "Hello, World" for building Galaxy IEs.

HiCBrowser

Simple web browser to visualize HiC tracks

HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

horizon

OpenStack Dashboard (Horizon)

ie-builder

build IEs from a descriptive YAML file

infrastructure-playbook

Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/

iReport

iReport Galaxy tool

jb-analytics-reports

null

jb-galaxy-blaster

JBrowse Galaxy Blaster Plugin

jbrowse

A modern genome browser built with JavaScript and HTML5.

jbrowse-apollows-gene-list

Load the searchable feature list as a JBrowse plugin / popup

jbrowse-chado-postgraphql

null

jbrowse-chat

WIP Chat plugin for JBrowse

jbrowse-chat-server

Server component to https://github.com/erasche/jbrowse-chat/

jbrowse-dark-theme

null

jbrowse-minimalist-theme

null

jbrowse-registry

JBrowse Plugin Registry

JBrowse-REST-API-Example

example implementation of a JBrowse REST API compatible server

jbrowse-tours

JBrowse Interactive Tours

kami-solver

Solve State of Play's "Kami" puzzles

keepassx

KeePassX is a cross platform port of the windows application ?Keepass Password Safe?.

kibana-authentication-proxy

Hosts the latest kibana3 and elasticsearch behind Google OAuth2, Basic Authentication or CAS Authentication

maraschino

A front-end for HTPCs

md-data-table

Material Design Data Table for Angular Material

miscellaneous

??????

morse-trainer

null

msa-seqtools

Convience tools to work with seqs

mulled

Mulled - Automatized Containerized Software Repository

OpenRefine-galaxy-ie

Galaxy Interactive Environment for theOpenRefine spreadsheet application

orangeforum

A light-weight forum

parsec

Access Galaxy at the speed of light with automatically generated BioBlend wrappers

pbsim

Automatically exported from code.google.com/p/pbsim

pico_galaxy

Galaxy tools and wrappers for sequence analysis

planemo

Command-line utilities to assist in developing tools for the Galaxy project.

pluginapp

null

presentations

null

primitive

Reproducing images with geometric primitives.

proteomics-datatypes

Proteomics datatypes definitions for Galaxy

public-galaxy-servers

null

pulsar

Pulsar is the distributed job execution application built for Galaxy (http://galaxyproject.org/).

python-chado

A Python library for interacting with Chado database

python-format-detection

null

raven-php

Raven is a PHP client for Sentry (getsentry.com)

readeef

Readeef feed agregator

remapper

Library for working with (simple) redeclipse/cube2/saurbraten map files

RFTools

A set of blocks and items to help with RF in general. Currently contains a Dimension Builder, Teleportation System, Shield System, RF monitor, an RF network debug tool and an automatic crafter

rGalaxyConnector

A couple of small wrapper functions around gie_helpers for use in interactive R sessions

seqtrace

Automatically exported from code.google.com/p/seqtrace

seqtrace-1

Automatically exported from code.google.com/p/seqtrace

shed

alternative toolshed for galaxy

streama

It's like Netflix, but self-hosted! http://dularion.github.io/streama/

telegraf

The plugin-driven server agent for collecting & reporting metrics.

tex-dotplot

null

textnews

Nachrichten als reine Text in puristischer Website

tool-dependencies-venv

create Galaxy tool_dependencies.xml from terminal history

tools-iuc

Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission

training-material

A collection of training material from offered Galaxy courses

ulogme

Automatically collect and visualize usage statistics in Ubuntu/OSX environments.

Unity3d-Dungeon-Generator

A procedural dungeon generator for Unity3d

uwsgi-galaxy-maintenance

uWSGI app to stand in for Galaxy during maintenance times.

vagrant-galaxy-casperjs

Vagrant image with which to run casper.js tests on galaxy

vcflib-tools

A collection of Galaxy wrappers for vcflib utilities

videojs-framebyframe

frame-by-frame stepping plugin for use with video.js

vnc-screenshot

Golang VNC screenshot utility

Commits To