Andrey Kislyuk

Login: kislyuk

Company: @chanzuckerberg, @ExascaleBiosystems, @dnanexus

Location: San Francisco, CA

Bio: null

Blog: http://kislyuk.com/

Blog: http://kislyuk.com/

Member of

2. Chan Zuckerberg Initiative
3. Common Workflow Language
4. ENCODE DCC
5. Human Cell Atlas
6. PyOTP

Repositories

aegea

Amazon Web Services Operator Interface

akutils

null

ansible-repository

A repository for ansible playbooks and snippets.

aosp-de

null

argcomplete

Python and tab completion, better together.

args

Argument Parsing for Humans?

awesome-interviews

:octocat: A curated list of awesome lists of interview questions.

Azimuth

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency

babel

Babel is a compiler for writing next generation JavaScript.

backports.tempfile

Backports of new features in Python's tempfile module

barkeep

The friendly code review system.

big-list-of-naughty-strings

The Big List of Naughty Strings is a list of strings which have a high probability of causing issues when used as user-input data.

boto

Python interface to Amazon Web Services

boto3

**Developer Preview** AWS SDK for Python

botocore

The low-level, core functionality of boto 3.

bwa

BWA: Maps reads to a reference genome using the Burrows-Wheeler Aligner

carta-playbooks

Ansible playbooks for cartographer.us

cartographer

Map the soul.

cfncluster

CfnCluster is a framework that deploys and maintains HPC clusters on AWS.

CG-Pipeline

Genome assembly/prediction/annotation pipeline for the Linux command line

chalice

Python Serverless Microframework for AWS

chef

A systems integration framework, built to bring the benefits of configuration management to your entire infrastructure.

cloud9

Cloud9 IDE - The modern IDE built on Node, JavaScript and HTML5. This is the OSS component of the broader service option at c9.io

common-workflow-language

Repository for CWL Specifications

compsci-papers

Influential computer science papers

connexion

Swagger/OpenAPI First framework for Python on top of Flask with automatic endpoint validation & OAuth2 support

cpython

Semi-official read-only mirror of the CPython Mercurial repository

cwltool

Common Workflow Language reference implementation

developer.github.com

GitHub API documentation

dmtk

DNA Modification Toolkit

dnanexus-answers

DNAnexus Answers

dnanexus-oauth2-demo

null

docs

Documentation resources for dat and the surrounding ecosystem

domovoi

AWS Lambda event handler manager

dotfiles

null

drakon_editor

DRAKON Editor

dxca

DNAnexus Celera Assembler integration

dx-falcon

DNAnexus Falcon app prototype

dxssh

DNAnexus SSH demo

dx-toolkit

DNAnexus platform client libraries.

dynamoq

A DynamoDB Command Line Interface with JSON I/O

eight

Python 2 to the power of 3

encryptxml

Python XML Encryption library

ensure

Validate conditions, Python style.

everytab

A Chrome tab manager extension that doesn't suck

eviltransform

Transport coordinate between earth(WGS-84) and mars in china(GCJ-02).

ExpressionMatrix2

Software for exploration of gene expression data from single-cell RNA sequencing.

FALCON

FALCON: experimental PacBio diploid assembler

file

Read-only mirror of file CVS repository, updated nightly. NOTE: do not make pull requests here, nor comment any commits, submit them usual way to bug tracker or to the mailing list. Maintainer(s) are not tracking this git mirror.

flask

A microframework based on Werkzeug, Jinja2 and good intentions

flask-assert

null

ftp_fetcher

null

garuda

null

github3.py

Python library for interfacing with the GitHub APIv3

gollum

A simple, Git-powered wiki with a sweet API and local frontend.

google-apps-radius

RADIUS server that authenticates against a Google Apps domain.

hipston

High Performance Storage Object Namespace

hisat

Fast spliced aligner with low memory requirements

HLA

xHLA: Fast and accurate HLA typing from short read sequence data

hstspreload

HSTS and HPKP support for Python HTTP clients

httpnext

Next Generation HTTP for Python

jp

Command line interface to JMESPath - http://jmespath.org

jQuery-File-Upload

Multiple File Upload widget with Drag&Drop support for jQuery

keymaker

Lightweight SSH key management on AWS EC2

kislyuk.com

Personal page

libgphoto2

TESTING. PRELIMINARY REPO DO NOT USE SERIOUSLY YET

likelybin

Unsupervised binning of metagenomes using MCMC.

lxd

Daemon based on liblxc offering a REST API to manage containers

mdns-proxy

Unicast DNS to multicast DNS proxy

MetaPathways_Python_Koonkie.3.0

MetaPathways is a meta'omic analysis pipeline for the annotation and analysis for environmental sequence information. MetaPathways is a modular annotation and analysis pipeline that uses a user-friendly graphical user interface and knowledge engine data structure to predict metabolic interaction networks from environmental sequence information. Currently, MetaPathways supports genomic read quality control, open reading frame (ORF) prediction, ORF annotation, and environmental pathway-genomes database (ePGDB) construction compatible with the Pathway Tools browser by SRI.

node-complexify

node.js port of jquery.complexify.js

npm

a package manager for node

oauth2_proxy

A reverse proxy that provides authentication with Google, Github or other provider

og-aws

? Amazon Web Services ? a practical guide

omnigollum

Omniauth authentication for gollum

Probabilistic-Programming-and-Bayesian-Methods-for-Hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

py-config-skel

null

pyston

An open-source Python implementation using JIT techniques.

rehash

Resumable hashlib: a picklable interface to CPython's OpenSSL-based hashlib standard library

requests

Python HTTP Requests for Humans?.

requests-http-signature

A Requests auth module for the HTTP Signature IETF draft standard RFC

requests-oauthlib

OAuthlib support for Python-Requests!

requests-toolbelt

A toolbelt of useful classes and functions to be used with python-requests

rockhopper

Rockhopper Linux

roof

Friendly Python test coverage reporting

roslyn

Old mirror of Microsoft .NET Compiler Platform, now at:

Scripts

Scripts developped over time and (sometimes) still usefull

signer

WS Security XML Certificate signing for Ruby

sysadmin-reading-list

Reading list for the larval stage sysadmin

thermos

Deploy Flask applications on AWS Lambda

tractorbeam

File I/O staging for JSON documents with Amazon S3 URLs

tweak

Python application configuration engine

urchin

null

urllib3

Python HTTP library with thread-safe connection pooling, file post support, sanity friendly, and more.

watchtower

Python CloudWatch Logging: Log Analytics and Application Intelligence

xbcf

eXtensible Block Compression Format

yq

Command-line YAML and XML processor - jq wrapper for YAML/XML documents

Commits To