Denis Moreno

Login: Galithil

Company: Scilifelab

Location: Stockholm

Bio: I spend most of my life pressing buttons to make a pattern of lights change however I want. Today, the pattern of lights is all wrong.

Blog:

Blog:

Member of

1. National Genomics Infrastructure
2. Science For Life Laboratory

Repositories

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bisect-me

Git bisect exercise.

charon

Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.

de_novo_scilife

null

flowcell_parser

Collection of python scripts to parse Illumina Xten output

FRC_align

Computes FRC from SAM/BAM file and not from afg files

Gaffophone

Reddit bot that makes noise.

gali_uttt_bot

null

genologics

Python interface to the GenoLogics LIMS server via its REST API.

genologics_sql

Python interface for the Genologics Postgres database.

genomics-dashboard

null

gesthopitaljava

Automatically exported from code.google.com/p/gesthopitaljava

GildedRose-Refactoring-Kata

Starting code for the GildedRose Refactoring Kata in many programming languages.

github-workflow-exercise

Exercise to practice collaborative GitHub workflow.

git-rebase-squash-exercise

Git rebase and commit squashing exercise.

irma-provision

Ansible playbooks for provisioning NGI pipeline and related sw

LIMS2DB

null

lims_dashboard

null

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

MultiQC_Clarity

MultiQC plugin interacting with the Illumina Genologics Clarity LIMS

NGI_dashboards

SciLifeLab NGI Dashboard Code

ngi_pipeline

Code driving the production pipeline at SciLifeLab (not yet in production)

NGI-RNAseq

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

qaTools

Some more QA

scilifelab

Misc code snippets for Science For Life Laboratory

scilifelab_epps

A collection of Genologics Clarity LIMS EPPs used at Scilifelab.

standalone_scripts

Repository to store standalone scripts that do not belong to any bigger package or repository

status

null

statusdb

Python wrappers and methods to work with CouchDB's instance at NGI Stockholm

TACA

Tool for the Automation of Cleanup and Analyses

tflearn

Deep learning library featuring a higher-level API for TensorFlow.

travis-testing

null

wod-char-simulator

Automatically exported from code.google.com/p/wod-char-simulator

Commits To