National Genomics Infrastructure

Login: NationalGenomicsInfrastructure

Company: null

Location: Stockholm/Uppsala

email: support@ngisweden.se

Blog: http://www.scilifelab.se/platforms/ngi/

Members

1. Denis Moreno
2. Johan Dahlberg
3. Johan Hermansson
4. Mattias Ormestad
5. Maxime Garcia
6. Per Kraulis
7. Phil Ewels
8. Szilveszter Juhos

Repositories

aliceflow

NextFlow framework to streamline the Genalice variant call pipeline

CAVA

Count-based analysis of variants in long amplicons

charon

Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.

HTT-repeat-analysis

null

icing

An attempt to make HLA typing from OxfordNanopore reads (MinION platform)

irma-provision

Ansible playbooks for provisioning NGI pipeline and related sw

NGI_dashboards

SciLifeLab NGI Dashboard Code

ngi_pipeline

Code driving the production pipeline at SciLifeLab

ngi_reports

Code to generate reports for use by the NGI in SciLifeLab

ngi_visualizations

Next-Gen Sequencing Visualisation Scripts.

OrderPortal

A portal for orders (a.k.a. requests, project applications) to a facility from its users.

piper

A genomics pipeline build on top of the GATK Queue framework

plates

NGI plate database

VCF_Comparisons

Compare two VCF files and generate individuals stats and comparisons for snp and indels