Nolan Nichols

Login: nicholsn

Company: Genentech

Location: SF Bay Area, CA

Bio: null

Blog: http://www.linkedin.com/in/nolannichols

Blog: http://www.linkedin.com/in/nolannichols

Member of

1. IBIC
2. International Neuroinformatics Coordinating Facility (INCF)

Repositories

2016-01-26-git-sample

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angular-seed

Seed project for angular apps.

ansible-role-mindboggle

Ansbile Galaxy Role for Mindboggle

ansible-role-miniconda

Ansilbe role to install the anaconda python distribution

ansible-role-supervisor

A role for creating supervisor tasks.

ansible-role-virtuoso

Ansible role to provision Virtuoso 7 from source

ansible-role-xnat

Ansible role to build XNAT - a medical imaging data management system

api-examples

Allen Institute API usage examples

bd2k-notebooks

Example notebooks related to the NCANDA BD2K Supplement

brainhack_reports

briff reports of work completed during a brainhack event

bulbs

A Python persistence framework for graph databases.

callimachus

Callimachus is a highly scalable platform for creating and running data-driven websites

cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

datasci_course_materials

Public repository for course materials for the Spring 2013 session of Introduction to Data Science, an online coursera course.

dcmstack

DICOM to Nifti conversion with meta data preservation

deepdream

null

doc2hub

convert google docs to git repositories

docker-flower

Flower Docker containder

docker-marmotta

Apache Marmotta Docker Container

docker-rabbitmq

Learning Docker.io by creating a RabbitMQ container

docker-redis

Redis Docker container

example

null

flask_skeleton

An easy-to-use Flask template

fma

Toy FMA repo for example queries.

fmri-stats

Teaching code related to fMRI statistics

gigascience_brainhack_commentary

Commentary on Brainhack for the Gigascience Brainhack thematic series

girder

A data management platform for the web, developed by Kitware

HCLSDatasetDescriptions

null

hcp2nipype-hack2015

The outcomes of the HCP to Nipype project at the OHBM Hackathon 2015.

homebrew-cask

a friendly homebrew-style CLI workflow for the administration of Mac applications distributed as binaries

hospital-compare

Heroku App

house

Bug tracker for my house

ibicERSN

Extract-Remove-Scanner-Noise Utility

incf_engine

Refactor of flask skeleton, virtuoso & tornado application framework

informatics.io

null

metasearch

null

Metrics

This repository contains the results of the FAIR Metrics Group

mindboggle

Automated anatomical brain label/shape analysis software (+ website)

module-template

A template for ReproNim teaching modules

nap

neuroinformatics app platform

ncanda-datacube-app

An app demonstrating the use of NCANDA data modeled as RDF Data Cubes.

ncanda-data-integration

This is the Data Integration, MRI, and Neuroinformatics Component of the National Consortium on Alcohol and NeuroDevelopment in Adolescence (NCANDA), funded by the NIAAA.

NDA-sprint

repo to discuss NDA sprint

NeuroVault

Easy to use web database for statistical maps.

nibabel

Python package to access a cacophony of neuro-imaging file formats

nicholsn.github.io

Nolan Nichols Homepage

nidm

Neuroimaging Data Model: a library for neuroimaging data sharing

nidm-api

A restful api and client for NIDM

nidm-datacube-app

Example AngularJS App working with a NIDM Data Cube

nidm_ide

An integrated development environment for querying NIDM documents based on nginx, blazegraph, yasgui stack.

nidm-query

A repository of NIDM queries

nidm-training

Training materials for learning NIDM

ni-.github.io

NIDASH Homepage

nildpy

null

nimh_data_archive

A Python client interface to the NIMH Data Archive Data Dictionary API

ni-o

NIDASH Ontology

nipype

Workflows and interfaces for neuroimaging packages

niq-panamax

NiQuery Panamax Templates

niquery

Neuroimaging Query Platform

niq-worker-fsl

NiQuery worker node for fsl

nitime

Timeseries analysis for neuroscience data

notebooks

null

ohbm-seattle.github.com

HBM Hackathon - open brain mapping in the cloud

opencga

An Open Computational Genomics Analysis platform for big data processing and analysis in genomics

openfmri

code related to the OpenFMRI project

panamax-contest-templates

null

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pelican-bootstrap3

Bootstrap 3 theme for Pelican

pelican-themes

Themes for pelican

Philips-Multiframe-DICOM

Examples datasets and IPython notebooks describing the Philips Enhanced DICOM (Multiframe) format

Processor

Generic Linked Data processor and server. Apache License.

prov

A suites of Python modules for encoding, tracking, and storing provenance assertions

provbulbs

null

ProvenanceLibrary

null

provisioning

Ansible roles for provisioning Docker containers

pyAIM

Annotation Image Markup Python Library

pyAnnotator

Python interface to the NCBO Annotator tool

PyCap

REDCap in Python

pyxnat

XNAT in Python

rdflib

RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.

rdflib-sparqlstore

An RDFLib store around Ivan Herman et al.'s SPARQL service wrapper, with namespace bindings

redcap_rdf

A utility for converting REDCap data and data dictionaries into RDF Data Cubes with semantic annotations

roygbiv

Roy G. Brain Image Viewer for browser-based visualization of Mindboggle cortical surface label/shape data

share_tutorials

Some simple Jupyter Notebooks for accessing, querying, and exporting data from SHARE

sibis

Scalable Informatics for Biomedical Imaging Studies (SIBIS) Python Package

simple-application-framework

a simple way to deploy python-ish apps

sparqlwrapper

A wrapper for a remote SPARQL endpoint

the-counted

http://www.theguardian.com/us-news/ng-interactive/2015/jun/01/the-counted-police-killings-us-database

utilities

null

viewer

Viewers based on Slicer 4 envrionment

.vim

vim config

virtualenv-pythonw-osx

Install a working 'pythonw' into a virtualenv on Mac OS X

w3id.org

Website source code for w3id.org

warp

Warp - an LDP file manager

xc-custom

Your custom roles & Configuration

Commits To