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Satrajit Ghosh

Login: satra

Company: MIT

Location: Cambridge, MA, USA

Bio: My research interests span computer science and neuroimaging, in the areas of applied machine learning, software engineering, and clinical applications.

Blog: http://satra.cogitatum.org

Member of

Repositories

ADHD200: scripts to process the ADHD200 dataset
ANTs: Advanced Normalization Tools (ANTs)
auralbrain: Aural Brain Representation Tools
aws-openfmri-nipype: processing openfmri data on aws using nipype
BAW_Nipype: BRAINS AtuoWorkup built on Nipype
BIDS: Brain Imaging Data Structure
binder: Binder metapackage for usage, docs, and chat
biostar-central: BiosStar Q&A
boxjunction: A collection of recipes for Vagrant boxes
BrainBox: BrainBox is a javascript widget that let's you annotate and segment 3D brain imaging data collaboratively.
brainbundler: brainbundler
BrainImagingPipelines: BIPs
brainspell: null
CCGame: null
CMS_nipype: null
CMS_numpy_test: null
codeswamp: miscellaneous code
coinstac: Documentation for the COINSTAC ecosystem.
common-workflow-language: Repository for CWL Specfications
conda-recipes: build and test recipes for conda
connectomeviewer: Software Application for the Visualization and Analysis of Multi-Modal Multi-Scale Network and Neuroimaging Data with Python
CTK: A set of common support code for medical imaging, surgical navigation, and related purposes.
cwltool: Common Workflow Language reference implementation
dcmstack: DICOM to Nifti conversion with meta data preservation
DICOM-CTP-Anonymizer: null
doc2hub: convert google docs to git repositories
ds000114: Demo derived dataset based on OpenfMRI ds000114
ds000114-fmriprep: null
ds000114-freesurfer: null
earlPipeline: A backend-agnostic web application for visualizing and constructing modular data-processing pipelines
emacs: My GNU Emacs configuration
flask_skeleton: An easy-to-use Flask template
freesurfer: The official Freesurfer repository maintained by LCN
girder: A data management platform for the web
global2017: webpage for Brainhack Global 2017
gradient_analysis: null
HAWG-examples: HAWG example JSON files
heudiconv: little helper to ease DICOM conversion to ready-to-share folder with heuristics
ICA-AROMA: Software package of ICA-AROMA; a data-driven method to identify and remove motion-related independent components from functional MRI data.
impress.js: It's a presentation framework based on the power of CSS3 transforms and transitions in modern browsers and inspired by the idea behind prezi.com.
incf_engine: Refactor of flask skeleton, virtuoso & tornado application framework
intro2nipype: null
ipython: Official IPython repository
ipython-website: IPython website sources. Any fixes to the website should be done on this repository.
ipyvolume: 3d plotting for Python in the Jupyter notebook based on IPython widgets using WebGL
ipywidgets: Static Widgets for IPython Notebooks
iri-server: null
jbabel: jbabel
jekyll: :globe_with_meridians: Jekyll is a blog-aware, static site generator in Ruby
julia: The Julia Language: a fresh approach to technical computing.
learn2learn: null
lesson-dataflows: null
lesson-template: A lesson template for neurohackweek lessons
lipsia: lipsia3.0
mapalign: Diffusion map based embedding and alignment
MARTA: MATLAB-based experimental control software
megaman: megaman: Manifold Learning for Millions of Points
mindboggle: Automated anatomical brain label/shape analysis software (+ website)
mindflows: nipype workflows
mindhive: scripts, wiki and issues related to mindhive
MIT-VoiceUp-App: null
mne-python: MNE : Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
module-dataprocessing: null
mPower: ResearchKit app studying Parkinson's disease, developed by Sage Bionetworks and University of Rochester.
MRCancel: Suppresses scanner noise during EPI recordings
mriqc: The package provides a series of image processing workflows to extract and compute a series of NR (no-reference), IQMs (image quality metrics) to be used in QAPs (quality assessment protocols) for MRI (magnetic resonance imaging).
murfi2: The realtime fMRI software platform - an MIT-MGH collaboration
MyVoiceUp-Android: Android application for http://voicesurvey.mit.edu
MyVoiceUp-iOS: null
nbconvert: IPython notebook converter
neuroML: A set of notebooks to introduce neuroscientists to concepts in machine learning.
NeuroVault: null
neurovault-ui: null
neuroviz: A set of notebooks to introduce neuroscientists to concepts in information visualization.
NewDicomToNrrdConverter: Rewrite of the Slicer utility to use DCMTK and remove GDCM 1.x dependency.
nhw-lesson-testing: null
nibabel: Python package to access a cacophony of neuro-imaging file formats
nibabel-feedstock: A conda-smithy repository for nibabel.
nibotmi: NIPY BuildBot Master Instance
ni-dm: NIDASH Data Model: a library for neuroimaging data sharing
ni-dm: NIDASH Data Model: a library for neuroimaging data sharing
nidm-notebooks: null
ni-dm: NIDASH Data Model: a library for neuroimaging data sharing
ni-dm: NIDASH Data Model: a library for neuroimaging data sharing
nidm-term-search: Term Search in NIDM File
nidm-training: Training materials for learning NIDM
nidmviewer: NIDM Results Viewer
nilearn: NeuroImaging with the Scikit-learn: fMRI inverse inference tutorial
nipy: Neuroimaging in python
nipyco: Nipy community web pages
nipy.github.com: Main website for the Neuroimaging in Python community
nipype: Workflows and interfaces for neuroimaging packages
nipype_env: A Docker image for a basic nipype environment
nipype-feedstock: A conda-smithy repository for nipype.
nipype_notebooks: null
NiPypeold: Python workflow tools and interfaces to existing software for neuroimaging analysis
NiPyPe-Paper: null
nipype_tutorial: Learn Nipype with these tutorial notebooks - go here to see them online -->
ni-terms: null
niwidgets: null
nobrainer: Neural networks to semantically segment brains in structural magnetic resonance images
notebooks: ipython notebooks
nsviewer: Neurosynth viewer
ohbm: python api wrapper for the ohbm conference
ohbm2010: posters for ohbm
ohbm-seattle.github.com: OHBM Seattle Brain Hack Blog
om-images: Singularity tutorial for an HPC cluster that has SLURM, Vagrant, and GPUs
om-tensorflow: Singularity file for Openmind to run tensorflow
one_click: One Click Sharing
Ontospy: Python toolkit for inspecting linked data knowledge models AKA ontologies or vocabularies.
open-brain-consent: Collect samples and formalize an ultimate subject consent form for brain imaging studies
OpenEvaluationArticle: null
openfmri: code related to the OpenFMRI project
PandocAcademic: A Sublime Text 2 plugin to handle Pandoc document (syntax) add functionnalities (bibliography, etc.) and convert them to other formats.
Papaya: A pure JavaScript medical research image viewer.
payforpredictions: Repository for developing solutions to the Pay for Predictions challenge
PeerComm: peer-to-peer communication framework for general purpose applications
peerlibrary: Capturing the global conversation on scholarly literature
peerreview2013: focused review for frontiers on peer review
ProjectManagementTemplate: This repository contains issues related to the management of all Whitaker Lab projects
prov: A suites of Python modules for encoding, tracking, and storing provenance assertions
ProvenanceLibrary: null
prov-feedstock: A conda-smithy repository for prov.
ProvToolbox: Java toolbox to create and convert Provenance Interchange data Model representations
pybids: Python package to access BIDS datasets
pybraincompare: brain image comparison and visualization methods for python!
PyCompGeom: A computational geometry library in python with a focus on meshes
pydeface: defacing utility for MRI images
PyNIDM: null
PySurfer: Python tools for Freesurfer
pyxnat: XNAT in Python
rdflib: RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.
realtime: null
reproducible-imaging: null
repronim.github.io: null
reprozip: ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
RIG: Project management of the reproducible informatics group
roygbiv: region of yearning brain image viewer
rscourse: Scripts for resting state conference educational course
sad: null
satra.github.com: Pages repo
scatterize: null
scientific-review: An article for a special issue of Frontiers in Computational Neuroscience (Beyond open access: visions for open evaluation of scientific papers by post-publication peer review)
scif: scientific filesystem: a filesystem organization for scientific software and metadata
scikit-learn: scikit-learn main repo
scipy: Scipy main repository
scipy_proceedings_2012: 2012 SciPy conference proceedings
shbt-datavis: SHBT - Statistics and Data Visualization
simple-application-framework: a simple way to deploy python-ish apps
simple_workflow: null
singularity: Singularity: Application containers for Linux
Slicer: Multi-platform, free open source software for visualization and image computing.
SLT: SpeechLab Toolkit
sparqlwrapper: A wrapper for a remote SPARQL endpoint
staged-recipes: A place to submit conda recipes before they become fully fledged conda-forge feedstocks
StarCluster: StarCluster is an open source cluster-computing toolkit for Amazon's Elastic Compute Cloud (EC2).
strapdown-zeta: Instant and elegant Markdown documents in the browser, Git powered markdown wiki server, mathjax and theme support, and many more features!
summerschool: Proposal for a summer school in reproducible research in Python, Summer 2012
test: null
testkraut: null
thelittlecorner: null
traitlets: A lightweight Traits like module
traits: null
uap: null
Unet-ants: UNet deep learning model for medical image segmentation
virtualenv: Virtual Python Environment builder
VocalTractModels: null
voiceup-mdd: null
w3id.org: Website source code for w3id.org
w3-prov: Implementations of the W3-Prov Recommendations
WikiNets: The WikiNets Project
workflow-editor: Create and edit Nipype workflows in the browser
www: Website based on the solid platform
X: The X Toolkit
xvfbwrapper-feedstock: A conda-smithy repository for xvfbwrapper.
YASGUI: Yet Another Sparql GUI

Commits To

Repository	Most Recent Commit	# Commits
satra/RIG	2018-03-14 15:46:05.0	30

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.