Rickard Hammarén

Login: Hammarn

Company: null

Location: Stockholm

Bio: Bioinformatician in the Genomics Production group at NGI at Science for Life Laboratory Stockholm, Sweden

Blog:

Blog:

Member of

1. Science For Life Laboratory

Repositories

flowcell_parser

Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output

genomics-status

Tornado server for tracking samples at NGI Stockholm

irma-provision

Ansible playbooks for provisioning NGI pipeline and related sw

maxulysse.github.io

My own jekyll personnal website

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

MultiQC_NGI

MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

Nextflow_test

Toy repository to replicate bugs

NGI-NextflowDocs

Common documentation for National Genomics Infrastructure pipelines built with Nextflow

ngi_pipeline

Code driving the production pipeline at SciLifeLab

NGI-RNAfusion

Development repo of the pipeline, main repo here:

NGI-RNAseq

RNA Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

NGI-smRNAseq

null

ngi_visualizations

Next-Gen Sequencing Visualisation Scripts.

NouGAT

null

Publications

Simple web-based publications reference database system.

scilifelab_epps

A collection of Genologics Clarity LIMS EPPs used at Scilifelab.

Scripts

Miscellaneous scripts, very much WIP and not intended for anyone else to use.

standalone_scripts

Repository to store standalone scripts that do not belong to any bigger package or repository

TACA

Tool for the Automation of Cleanup and Analyses

tldr-bash

Simplified and community-driven man pages http://tldr-pages.github.io/

Commits To