Name: NGI-NextflowDocs
Owner: Science For Life Laboratory
Description: Common documentation for National Genomics Infrastructure pipelines built with Nextflow
Created: 2016-10-28 10:34:45.0
Updated: 2017-09-15 07:32:41.0
Pushed: 2017-05-08 11:36:52.0
Homepage: null
Size: 10
Language: Groovy
GitHub Committers
| User | Most Recent Commit | # Commits |
|---|---|---|
| Phil Ewels | 2017-03-27 12:55:42.0 | 6 |
| Rickard Hammarén | 2017-05-08 11:36:51.0 | 3 |
Other Committers
| User | Most Recent Commit | # Commits | |
|---|---|---|---|
| Maxime Garcia | max@ithake.eu | 2016-11-22 14:02:53.0 | 3 |
| Maxime Garcia | max@ithake.eu | 2016-11-22 14:02:53.0 | 3 |
Common documentation for National Genomics Infrastructure pipelines built with Nextflow. Some variables are specific to Swedish UPPMAX cluster, but can be easily modified to suit any clusters.
See the Install documentation
See the options documentation
Config variables (eg. params.something) are loaded in the following order:
~/.nextflow/config)pipeline/nextflow.config)./nextflow.config)-c my_config)--something)Anything specified in more than one location will be overwritten by subsequent loads. The command line has preference over everything.
See Example Pipeline
Check the work directory, and especially the last one (which is the one that failed) for information about the failed process, and if needed, you can go up the chain of processes.