CD2H gitForager

Alice Minotto

Login: aliceminotto

Company: Earlham Institute

Location: Norwich, UK

Bio: null

Blog:

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Repositories

2017-10-31-norwich: null
biojs-vis-expression-bar: null
cyverseuk-util: A collection of scripts for the cyverse UK clusters
demo_image: tiny blast image for workshop demonstration
docker: null
EarlhamInstitute_scripts: null
game_of_life: null
gitpitch_test: null
ImageInfo: null
JSON.sh: a pipeable JSON parser written in Bash
kallisto_docker: docker image for kallisto
lab_journal: null
model_scripts: null
model_version2: second model with classes
polymarker_docker: dockerfile for automate build
renseq: Renseq Pacbio pipeline
scripts: null
shields: Shields badge specification, website and default API server
TADbit: TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
TSL-Training.github.io: null

Commits To

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This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.