Earlham Institute

Login: TGAC

Company: null

Location: Norwich, UK

email:

Blog: http://earlham.ac.uk

Members

  1. Alice Minotto
  2. Anil Thanki
  3. Bernardo Clavijo
  4. Daniel Mapleson
  5. Felix Shaw
  6. George Kettleborough
  7. Luis Yanes
  8. Matt Drew
  9. Nicola Soranzo
  10. Ricardo H. Ramírez-Gonzalez
  11. Richard Leggett
  12. Robert Davey
  13. Xingdong Bian
  14. null

Repositories

2016-03-08-TGAC
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2016-06-07-TGAC
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2016-10-18-EI
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2017-04-26-norwich
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2017-10-10-norwich
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2017-11-21-EI
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2018-10-02-DC
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2019-01-23-SWC
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361Division
361 Division - Scientific Training, Education and Learning
active-nav-q
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Aequatus
Earlham Institute's Synteny Browser
aequatus.js
Visualisation JavaScript library for Homologous Genes
bii-webapp
BII web/COPO
bioruby-polyploid-tools
Library and tools to deal with polyploid genomics
bioruby-polyploid-tools
Library and tools to deal with polyploid genomics
BIP_training
null
brassica
Brassica Information Portal
centrifuge
Classifier for metagenomic sequences
conan
Conan2 lightweight workflow manager
course_EMBO_at_TGAC_PPI_Sep2015
Program and some material for EMBO Practical Course on computational analysis of protein-protein interactions: From sequences to networks, taking place at TGAC, Norwich, UK, Sep-Oct 2015
earlham-galaxytools
Galaxy tools developed at the Earlham Institute
fluxion-tools
Fluxion Tools
grassroots-api
The Grassroots API - lightweight infrastructure for data federation, analysis and search
grassroots-build-tools
Scripts to manage the building of the different Grassroots infrastructure components
grassroots-client-qt-desktop
The desktop Grassroots client application for running services on Grassroots servers
grassroots-client-web-core
Web client core module
grassroots-client-web-elasticsearch-ingest
null
grassroots-client-web-field-pathogenomics
Grassroots yellow rust map web client
grassroots-client-web-irods-metadata
Use with Eirods-dav to add metadata
grassroots-core
The core libraries of the Grassroots infratructure
grassroots-doc
For https://readthedocs.org/
grassroots-docs
Documentation about the Grassroots Infrastructure
grassroots-geocoder
The Grassroots library to use for making requests to get GPS coordinates for addresses and vice versa
grassroots-handler-dropbox
The handler for accessing data stored on a Dropbox store within the Grassroots infrastructure
grassroots-handler-file
The handler for locally-mounted files and directories for the Grassroots infrastructure
grassroots-handler-http
The handler for accessing http(s)-based resources within the Grassroots infrastructure
grassroots-handler-irods
The handler for accessing iRODS data objects and collections within the Grassroots infrastructure
grassroots-jobs-manager-mongodb
The MongoDB-based Jobs Manager for the Grassroots infrastructure
grassroots-job-tracker
A simple job tracker using Django and MongoDB, with REST interface
grassroots-reference-services
This is a set of example configuration files for the Grassroots infrastructure to run some referred services
grassroots-server-apache-httpd
The Apache httpd server module for the Grassroots infrastructure
grassroots-service-blast
The BLAST services for the Grassroots infrastructure
grassroots-service-ensembl
A Service using the Ensembl REST API for the Grassroots infrastructure.
grassroots-service-example
An example service for developers to see how to develop services for the Grassroots infrastructure
grassroots-service-field-pathogenomics
The Grassroots service for geolocation and dates of samples of crop pathogenomic data
grassroots-service-germplasm
A Grassroots service for converting between seed codes
grassroots-service-irods
The iRODS search service for the Grassroots infrastructure
grassroots-service-polymarker
The Polymarker service for the Grassroots infrastructure.
grassroots-service-samtools
The SamTools service for the Grassroots infrastructure
grassroots-service-web-search
A Grassroots service that can wrap an existing external web-based search service into a Graassroots service
grassroots-web-portal-static
null
grassroots-web-portal-static-onepage
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indexing_prototypes
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irods_bash_completer
A tool to allow the iRODS client icommands to have auto-complete functionality within Bash
KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
kontaminant
Tool to look for contaminants, with a kmer database.
lssp_dock
null
MetaPipe
An effort-saving pipeline to run a series of QC, alignment and analysis tools on metagenomic sequencing data.
miso-lims
MISO: An open-source LIMS for NGS sequencing centres
MISO-Selenium-Tests
Selenium tests for MISO
Mozfest2015
Python/Django skeleton project for user driven ontology creation session at Mozfest2015
Mulea
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MultiPEN
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MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
NanoOK
Analysis tool for Nanopore sequencing data
NanoOK_Example
Example data for NanoOK
pipelion
A handy webapp for running system processes (Django)
portcullis
Splice junction analysis and filtering from BAM files
RAMPART
A configurable de novo assembly pipeline
SalmoNet
SalmoNet website
simlims
Old SimLims MISO code
spectre
A collection of Phylogenetics tools for creating and manipulating networks and trees.
statsdb
StatsDB
subsampler
Small tool to subsample fasta and fastq files.
TGACBrowser
TGAC's Genome Browser
TgacConanProcs
External Tools used at TGAC wrapped as Conan Processes
This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.